CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig371 contig Csv1_Contig371:1..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLOTE (Lysyl-tRNA synthetase OS=Clostridium tetani GN=lysS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.134e-18
Identity = 50/152 (32.89%), Postives = 86/152 (56.58%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTT-ARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M++ + +++ G+ K+KY          EI+F PP++RI MV+ +++ + +   +     EA + +      F++K      T A +L+     ++E+  + P+F+ ++P  +SPL+K     P  TERFE F+   E+CNAYTELNDPI
Sbjct:  288 TENMVAYIAEKVCGNTKVKYEET-------EIEFRPPWKRITMVDSVKEYSGVDFNEIKTDEEARELVKGK--DFELKKKLEDCTKADILNLFFEEYVEKNLIQPTFVCDYPVEISPLSKKKNDNPEYTERFEGFVYGRELCNAYTELNDPI 430          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CHLCH (Lysyl-tRNA synthetase OS=Chlorobium chlorochromatii (strain CaD3) GN=lysS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.134e-18
Identity = 42/121 (34.71%), Postives = 75/121 (61.98%), Query Frame = 2
Query:   92 EIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            EI   PPFRR+ + + + +  +    KD+ + ++ + L +   +  ++  P     +++D++ G F+E   + P+FI ++P  MSPLAK H ++PG+ ERFEL +   EVCN+++ELNDP+
Sbjct:  326 EISVKPPFRRLTISDAIAEYTD----KDIRN-KSEEELRNIAKELGLELDPKIGNGKIIDEIFGEFVEPKLIQPTFITDYPTEMSPLAKEHAAQPGIVERFELIVGGKEVCNSFSELNDPV 441          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SULAC (Lysyl-tRNA synthetase OS=Sulfolobus acidocaldarius GN=lysS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.046e-17
Identity = 59/153 (38.56%), Postives = 86/153 (56.21%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTAR--LLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+ML  ++K I    KIKY   G +     I+F+  FR+I M++ L ++    + K   S E  K L D   K  +K P      R  +++KL    +  T + P+F++++P   +PL K HRSK GL ERFEL++   E+ NAYTELNDPI
Sbjct:  283 TEEMLQDVVKNINNDSKIKYSIGGKE---YTIEFSQ-FRKITMIDSLTEVLGKDVDK--MSDEELKSLMD---KNGLK-PRGNMYIRGLMIEKLFDKLVTPTLIQPTFVLDYPVETTPLCKPHRSKQGLVERFELYVAGMELANAYTELNDPI 425          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_METMJ (Lysyl-tRNA synthetase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=lysS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.046e-17
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE++LS + +++ G+    +  +       ++DF+ P+RR+ M E + + A +  P  ++  E + +  + CV+    C    T    L     HF E+  + P+FI + P   SPLAK HRSK GLTERFELFI   E+ N ++ELNDP+
Sbjct:  283 TEEILSHLAEKVLGTTVCSFAGH-------DLDFSRPWRRLTMEEAVREYAGIDFPA-MSLEELHAFGLEHCVE---GCESAATRGEYLVLFFEHFGEKHLIQPTFIYDFPIENSPLAKKHRSKEGLTERFELFIAGMEMANGFSELNDPL 422          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BACTN (Lysyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=lysS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.046e-17
Identity = 50/152 (32.89%), Postives = 84/152 (55.26%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIK-CPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TEK+L  +   + GS +          D   I F  P+RR+ +++ +++     +     + ++ + +   C +  ++         +L+D++ G F E + + P+FI ++P  MSPL K HRSKPGLTERFEL +N  E+ NAY+ELNDP+
Sbjct:  293 TEKLLERICIAVNGSTETVV-------DGKTISFKAPYRRLPILDAIKEKTGYDL-----NGKSEEEIRQICKELKMEEIDDTMGKGKLIDEIFGEFCEGSYIQPTFITDYPVEMSPLTKMHRSKPGLTERFELMVNGKELANAYSELNDPL 432          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SYNR3 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain RCC307) GN=lysS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.367e-17
Identity = 54/152 (35.53%), Postives = 84/152 (55.26%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPP-PQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+++S + +++ GS  I Y          EI+  P +RR  M E +++   L    D A   + +  A A     ++ P    +  RLL++     +EET + P+F+ ++P  +SPLA+ HRSKPGL ERFELFI   E  NA++EL DP+
Sbjct:  278 TEELISSVTQQVCGSTLINYQGT-------EINLAPGWRRATMHELVKEATGL----DFAGFSSREDAAAAMEAKGLQTPALADSVGRLLNEAFEQAVEETLIQPTFVTDYPVEISPLARSHRSKPGLVERFELFIVGREHGNAFSELTDPV 418          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLONN (Lysyl-tRNA synthetase OS=Clostridium novyi (strain NT) GN=lysS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.785e-17
Identity = 54/153 (35.29%), Postives = 84/153 (54.90%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLA--DACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M++ + +++ G+ K+ Y          EIDF PP+RRI MV+ +++ A +   +     EA +     +  +K ++K     T   +L  L   F EE  + P+F+ ++P+  SPL K  R    LTERFE F+   E+CNAY+ELNDPI
Sbjct:  297 TENMVAYVCEKVNGTTKVMYEGT-------EIDFKPPWRRITMVDAVKEYAGVDFNEVKTDEEAREIAKSKELELKKELK---DCTKGDILVALFEEFGEEKLMQPTFVCDYPKENSPLTKKKRGNDELTERFEGFVYGREICNAYSELNDPI 439          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLOBH (Lysyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=lysS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.785e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M++ + +++ G+ K++Y          EIDFTPP+RR+ MV+ + + A +        +EA     +  ++F  K     T   +L  L   F E+  + P+FI ++P   SPL K  R     TERFE F+   EVCNAY+ELND I
Sbjct:  288 TENMIAYICEKVLGTTKVQYEGT-------EIDFTPPWRRLTMVDAVREYAGVDFNTIKDDIEARTIAKEKHIEFK-KELKDCTKGDVLIGLFEEFCEDKLMQPTFICDYPVENSPLTKKKRGNEAFTERFEGFVFGREVCNAYSELNDSI 430          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLOB1 (Lysyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=lysS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.785e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M++ + +++ G+ K++Y          EIDFTPP+RR+ MV+ + + A +        +EA     +  ++F  K     T   +L  L   F E+  + P+FI ++P   SPL K  R     TERFE F+   EVCNAY+ELND I
Sbjct:  288 TENMIAYICEKVLGTTKVQYEGT-------EIDFTPPWRRLTMVDAVREYAGVDFNTIKDDIEARTIAKEKHIEFK-KELKDCTKGDVLIGLFEEFCEDKLMQPTFICDYPVENSPLTKKKRGNEAFTERFEGFVFGREVCNAYSELNDSI 430          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THELT (Lysyl-tRNA synthetase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=lysS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.044e-17
Identity = 56/151 (37.09%), Postives = 89/151 (58.94%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKY-LADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE ++S ++  + GSYK+ Y         +E+DF PP++RI M E ++   ++ I +D  + E   Y L +  V+ D K     +  ++++KL    +EE  + P+F+++HP  +SPLAK HR  P LTERFE  I   E+ NA++ELNDP
Sbjct:  281 TESLISELVLHLYGSYKLTYQG-------VELDFKPPWKRIKMREFIKSRLDVDILED--NDEKLYYVLKERGVEPDTK-----SREKMIEKL-WDLVEEEVIQPTFLMDHPVDISPLAKRHRDDPRLTERFEPIIFGMEMGNAFSELNDP 416          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_CLOTE6.134e-1832.89Lysyl-tRNA synthetase OS=Clostridium tetani GN=lys... [more]
SYK_CHLCH6.134e-1834.71Lysyl-tRNA synthetase OS=Chlorobium chlorochromati... [more]
SYK_SULAC1.046e-1738.56Lysyl-tRNA synthetase OS=Sulfolobus acidocaldarius... [more]
SYK_METMJ1.046e-1735.10Lysyl-tRNA synthetase OS=Methanoculleus marisnigri... [more]
SYK_BACTN1.046e-1732.89Lysyl-tRNA synthetase OS=Bacteroides thetaiotaomic... [more]
SYK_SYNR31.367e-1735.53Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_CLONN1.785e-1735.29Lysyl-tRNA synthetase OS=Clostridium novyi (strain... [more]
SYK_CLOBH1.785e-1735.10Lysyl-tRNA synthetase OS=Clostridium botulinum (st... [more]
SYK_CLOB11.785e-1735.10Lysyl-tRNA synthetase OS=Clostridium botulinum (st... [more]
SYK_THELT3.044e-1737.09Lysyl-tRNA synthetase OS=Thermotoga lettingae (str... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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