CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig371 contig Csv1_Contig371:1..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THEEB (Lysyl-tRNA synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=lysS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.044e-17
Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +++    E+ G+ KI Y           ID TPP+RR+ M + +     +   + L  + A K  A      D+      T  R+L+++    +E T + P+F++++P  +SPLAK HRS+PGL ERFELFI   E  N+++EL DP+
Sbjct:  290 TEAIITTGAMEVLGTLKITYQGE-------TIDLTPPWRRVTMHDAVLAATGIDF-RQLGDLTAAKIAAQKVGVKDLDTC--DTIGRVLNEVFEQIVEPTLIQPTFVLDYPVEISPLAKPHRSQPGLVERFELFIVGREHANSFSELTDPL 430          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THEAB (Lysyl-tRNA synthetase OS=Thermosipho africanus (strain TCF52B) GN=lysS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.044e-17
Identity = 53/151 (35.10%), Postives = 88/151 (58.28%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE++   +++++ G+ K+KY         IEIDF+ P+RR+ M + +++   + I +D    +  + L    V+ +IK         L++KL    +E+  V P+F++ HP  +SPLAK HR  P +TERFEL I   E+ NA++ELNDP+
Sbjct:  281 TEELFVFIVEKLFGTTKVKYQD-------IEIDFSRPWRRVKMRDFIKEHLGVDILEDTEE-KMLEVLKQHDVEVEIK-----DKGHLIEKL-WDLVEDKVVQPTFLLEHPVEISPLAKKHREDPRVTERFELIIYGREMANAFSELNDPV 417          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLOBM (Lysyl-tRNA synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=lysS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.044e-17
Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M++ + +++ G+ K++Y          EIDFTPP+RR+ MV+ +++ A +        +EA     +  ++F  K     T   +L  L   F E+  + P+FI ++P   SPL K  R     TERFE F+   EVCNAY+ELND I
Sbjct:  288 TENMIAYICEKVLGTTKVEYEG-------AEIDFTPPWRRLTMVDAVKEYAGVDFNIIKDDIEARAIAKEKHIEFK-KELKDCTKGDVLIGLFEEFCEDKLMQPTFICDYPVENSPLTKKKRGNEAFTERFEGFVFGREVCNAYSELNDSI 430          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLOBL (Lysyl-tRNA synthetase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=lysS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.044e-17
Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M++ + +++ G+ K++Y          EIDFTPP+RR+ MV+ +++ A +        +EA     +  ++F  K     T   +L  L   F E+  + P+FI ++P   SPL K  R     TERFE F+   EVCNAY+ELND I
Sbjct:  288 TENMIAYICEKVLGTTKVEYEG-------AEIDFTPPWRRLTMVDAVKEYAGVDFNIIKNDIEARTIAKEKHIEFK-KELKDCTKGDVLIGLFEEFCEDKLMQPTFICDYPVENSPLTKKKRGNEAFTERFEGFVFGREVCNAYSELNDSI 430          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLOBK (Lysyl-tRNA synthetase OS=Clostridium botulinum (strain Okra / Type B1) GN=lysS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.044e-17
Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M++ + +++ G+ K++Y          EIDFTPP+RR+ MV+ +++ A +        +EA     +  ++F  K     T   +L  L   F E+  + P+FI ++P   SPL K  R     TERFE F+   EVCNAY+ELND I
Sbjct:  288 TENMIAYICEKVLGTTKVEYEG-------AEIDFTPPWRRLTMVDAVKEYAGVDFNIIKNDIEARTIAKEKHIEFK-KELKDCTKGDVLIGLFEEFCEDKLMQPTFICDYPVENSPLTKKKRGNEAFTERFEGFVFGREVCNAYSELNDSI 430          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLOAB (Lysyl-tRNA synthetase OS=Clostridium acetobutylicum GN=lysS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.044e-17
Identity = 52/152 (34.21%), Postives = 82/152 (53.95%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTT-ARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M++   +++ G+ KI Y          EID TPP+RR+ MV+ +++ + +         EA +   +   K ++K      T   +L+ L   + E+  + P+F+ ++P  +SPL K  R  P  TERFE FI   E+CNAY+ELNDPI
Sbjct:  299 TENMVAYACQKVNGTTKITYEGT-------EIDLTPPWRRVTMVDIVKEHSGIDFSTVKTDEEAREIAKEK--KLELKKELKDCTKGDILNALFEEYGEKKLIQPTFVCDYPVEISPLTKKKRGNPEYTERFEGFIYGREICNAYSELNDPI 441          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRA5 (Lysyl-tRNA synthetase OS=Streptococcus agalactiae serotype V GN=lysS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.976e-17
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++  + K + G   I Y          EI    PF+R+ MV+ +++I  +   K++   EA     +  V  +       T   +++     F+E+T + P+F+  HP  +SPLAK + + P  T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHVTKTVKGDGPINYQGT-------EIKINEPFKRVHMVDAVKEITGIDFWKEMTLEEAQALAQEKNVPLEKHFT---TVGHIINAFFEEFVEDTLIQPTFVFGHPVEVSPLAKKNDTDPRFTDRFELFIMTKEYANAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRA3 (Lysyl-tRNA synthetase OS=Streptococcus agalactiae serotype III GN=lysS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.976e-17
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++  + K + G   I Y          EI    PF+R+ MV+ +++I  +   K++   EA     +  V  +       T   +++     F+E+T + P+F+  HP  +SPLAK + + P  T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHVTKTVKGDGPINYQGT-------EIKINEPFKRVHMVDAVKEITGIDFWKEMTLEEAQALAQEKNVPLEKHFT---TVGHIINAFFEEFVEDTLIQPTFVFGHPVEVSPLAKKNDTDPRFTDRFELFIMTKEYANAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLOK5 (Lysyl-tRNA synthetase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=lysS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.976e-17
Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETC----VNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ML+ + +++ G+ K+ Y          EIDF PP+ RI MV+ +++   +    D   VE++       V+ +I+           D LVG F EE C    + P+F++++P  +SPL K  R     TERFE FI   EVCNAY+ELNDPI
Sbjct:  288 TENMLAYVCEKVLGTTKVIYQDT-------EIDFKPPWNRITMVDAVKQFTKV----DFNEVESDDEARKIAVEKNIELKKELKDCTKGDILVGMF-EEFCEHKFIQPTFVMDYPVEISPLTKKKRGNDKYTERFEGFIFGREVCNAYSELNDPI 430          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BACSU (Lysyl-tRNA synthetase OS=Bacillus subtilis GN=lysS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.976e-17
Identity = 47/151 (31.13%), Postives = 83/151 (54.97%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +++ + +E+ G+  I+Y          +ID  P ++RI MV+ +++   +   +++   +A +Y  +     +++     T   ++++     +EET + P+FI  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  290 TENLVAHIAQEVLGTTTIQYGEE-------QIDLKPEWKRIHMVDAVKEATGVDFWEEVTVEQAREYAKE----HEVEIKDSMTVGHIINEFFEQKIEETLIQPTFIYGHPVEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPI 429          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_THEEB3.044e-1734.44Lysyl-tRNA synthetase OS=Thermosynechococcus elong... [more]
SYK_THEAB3.044e-1735.10Lysyl-tRNA synthetase OS=Thermosipho africanus (st... [more]
SYK_CLOBM3.044e-1735.10Lysyl-tRNA synthetase OS=Clostridium botulinum (st... [more]
SYK_CLOBL3.044e-1735.10Lysyl-tRNA synthetase OS=Clostridium botulinum (st... [more]
SYK_CLOBK3.044e-1735.10Lysyl-tRNA synthetase OS=Clostridium botulinum (st... [more]
SYK_CLOAB3.044e-1734.21Lysyl-tRNA synthetase OS=Clostridium acetobutylicu... [more]
SYK_STRA53.976e-1732.45Lysyl-tRNA synthetase OS=Streptococcus agalactiae ... [more]
SYK_STRA33.976e-1732.45Lysyl-tRNA synthetase OS=Streptococcus agalactiae ... [more]
SYK_CLOK53.976e-1736.77Lysyl-tRNA synthetase OS=Clostridium kluyveri (str... [more]
SYK_BACSU3.976e-1731.13Lysyl-tRNA synthetase OS=Bacillus subtilis GN=lysS... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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