CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRA1 (Lysyl-tRNA synthetase OS=Streptococcus agalactiae serotype Ia GN=lysS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.193e-17
Identity = 48/151 (31.79%), Postives = 77/151 (50.99%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++  + K + G   I Y          EI    PF+R+ MV+ +++I  +   K++   EA     +  V  +       T   +++     F+E+T + P+F+  HP  +SPLAK + + P  T+RFELF+   E  NA+TELNDPI
Sbjct:  288 TEGIIQHVTKTVKGDGPINYQGT-------EIKINEPFKRVHMVDAVKEITGIDFWKEMTLEEAQALAQEKNVPLEKHFT---TVGHIINAFFEEFVEDTLIQPTFVFGHPVEVSPLAKKNDTDPRFTDRFELFVMTKEYANAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SYNP6 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=lysS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.782e-17
Identity = 57/157 (36.31%), Postives = 82/157 (52.23%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIP--KDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEE----TCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +++ + +++ GS ++ Y           ID  PP++R  M E +     +     KDL +  A    A   V  D  CP        L KL+ H  EE    T + P+F+I++P  +SPLAK HRSKPGL ERFELFI   E  N+++EL DP+
Sbjct:  286 TETLIAQVAEQVVGSLQVPYQGQ-------TIDLAPPWKRATMAELVLAATGIDFESLKDLEAGIAAVKAAGIPVPED--CPN-------LGKLLNHCFEEKVEATLIQPTFVIDYPVEISPLAKPHRSKPGLVERFELFIVGRETANSFSELTDPV 426          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SYNE7 (Lysyl-tRNA synthetase OS=Synechococcus elongatus (strain PCC 7942) GN=lysS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.782e-17
Identity = 57/157 (36.31%), Postives = 82/157 (52.23%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIP--KDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEE----TCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +++ + +++ GS ++ Y           ID  PP++R  M E +     +     KDL +  A    A   V  D  CP        L KL+ H  EE    T + P+F+I++P  +SPLAK HRSKPGL ERFELFI   E  N+++EL DP+
Sbjct:  286 TETLIAQVAEQVVGSLQVPYQGQ-------TIDLAPPWKRATMAELVLAATGIDFESLKDLEAGIAAVKAAGIPVPED--CPN-------LGKLLNHCFEEKVEATLIQPTFVIDYPVEISPLAKPHRSKPGLVERFELFIVGRETANSFSELTDPV 426          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LEPIN (Lysyl-tRNA synthetase OS=Leptospira interrogans GN=lysS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.858e-17
Identity = 51/151 (33.77%), Postives = 90/151 (59.60%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDI-KCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE++++ + ++I G+ KI+Y   G D     ID +PP++R   V+ +++ + +   + ++  EA K  ++  +K D+ KC   QT  ++ D++     E   + P FI ++P+ +SPLAK +  KPG  ERFE ++   E+ NA+TELNDP
Sbjct:  286 TERLITHLAQKICGTLKIQY---GKDL----IDLSPPWKRTTYVDIIKEYSGIDFSQIISLEEAKKKASE--LKVDVSKC---QTIWKVADEVFSEKAEPNLIQPIFITDYPKELSPLAKSNPDKPGYVERFEPYVAGREIGNAFTELNDP 424          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LEPIC (Lysyl-tRNA synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=lysS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.858e-17
Identity = 51/151 (33.77%), Postives = 90/151 (59.60%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDI-KCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE++++ + ++I G+ KI+Y   G D     ID +PP++R   V+ +++ + +   + ++  EA K  ++  +K D+ KC   QT  ++ D++     E   + P FI ++P+ +SPLAK +  KPG  ERFE ++   E+ NA+TELNDP
Sbjct:  286 TERLITHLAQKICGTLKIQY---GKDL----IDLSPPWKRTTYVDIIKEYSGIDFSQIISLEEAKKKASE--LKVDVSKC---QTIWKVADEVFSEKAEPNLIQPIFITDYPKELSPLAKSNPDKPGYVERFEPYVAGREIGNAFTELNDP 424          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BACST (Lysyl-tRNA synthetase OS=Bacillus stearothermophilus GN=lysS PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.858e-17
Identity = 47/151 (31.13%), Postives = 82/151 (54.30%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +++ +  E+ G+ KI+Y  +        +D TP +RR+ MV+ +++   +   + ++  EA +   +      ++  P  T   ++++     +E+  + P+FI  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  285 TENLIAHIATEVLGTTKIQYGEH-------LVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKE----HGVEVAPHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNPDDPRFTDRFELFIVGREHANAFTELNDPI 424          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BACHD (Lysyl-tRNA synthetase OS=Bacillus halodurans GN=lysS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.157e-16
Identity = 46/151 (30.46%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +++ + K++ G+  I Y  +       E++  P +RR+ MVE +++   +    +++  EA     +     ++      T   ++++   HF+EE  + P+F+  HP  +SPLAK +   P  T+RFELFI   E  NA++ELNDPI
Sbjct:  286 TELLIAHIAKDVLGTTTITYGEH-------EVNLEPKWRRVHMVEAIKEETGVDFWNEMSDEEARALAKE----HNVPVKETMTYGHVVNEFFEHFVEEKLIQPTFVYGHPVAISPLAKKNPDDPRFTDRFELFIVGREHANAFSELNDPI 425          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THEM4 (Lysyl-tRNA synthetase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=lysS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.511e-16
Identity = 51/151 (33.77%), Postives = 88/151 (58.28%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE++   +++++ G+ KIKY +       +E+DF+ P+RRI M + +++   + I +D         L +  V+ +I+         +++KL    +E+  V P+F++ HP  +SPLAK HR  P +TERFEL I   E+ NA++ELNDP+
Sbjct:  281 TEELFVYIVEKLFGTTKIKYQN-------VELDFSRPWRRIKMRDFIKEHLGVDILEDSMG-RMMDVLEEHGVEVEIR-----DKGHMIEKL-WDLVEDKVVQPTFLLEHPVEISPLAKKHREDPRVTERFELIIYGREMANAFSELNDPV 417          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PROM4 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9211) GN=lysS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.511e-16
Identity = 53/155 (34.19%), Postives = 83/155 (53.55%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANL---QIPKDLASVEANKYLADACVKFDIKCPP-PQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+M+S +  +I GS  I+Y          E+D TPP+RRI M E + +   L   +  +D++          A     +  P    +  RL+++     +E     P+F++++P  +SPLA+ HRSKPG+ ERFELFI   E  NA++EL DP+
Sbjct:  288 TEEMISFVCSQICGSTTIQYQGK-------EVDLTPPWRRITMHELVLESTGLDFYEFGQDISKAST------AMQSVGLNVPDHADSVGRLMNEAFEQAVEGDLFQPTFVMDYPIEISPLARKHRSKPGIVERFELFIAGRETANAFSELIDPV 429          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_GRAFK (Lysyl-tRNA synthetase OS=Gramella forsetii (strain KT0803) GN=lysS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.511e-16
Identity = 47/151 (31.13%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE++L    + + G+    +  +       +I+F  P++R+ M + + +     I     + ++ K L +A    DI+        +L+D++ G   E   + P+FI ++P+ MSPL K HR  P LTERFEL +   E+ NAY+ELNDP+
Sbjct:  295 TEQLLEHCAEAVNGTTDATFGEH-------KINFKAPYKRLSMTDAIIEYTGFDI-----TGKSEKELYEAAKGMDIEVDDTMGKGKLIDEIFGEKCEGKFIQPTFITDYPKEMSPLCKEHRDNPELTERFELMVCGKEIANAYSELNDPL 433          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_STRA15.193e-1731.79Lysyl-tRNA synthetase OS=Streptococcus agalactiae ... [more]
SYK_SYNP66.782e-1736.31Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_SYNE76.782e-1736.31Lysyl-tRNA synthetase OS=Synechococcus elongatus (... [more]
SYK_LEPIN8.858e-1733.77Lysyl-tRNA synthetase OS=Leptospira interrogans GN... [more]
SYK_LEPIC8.858e-1733.77Lysyl-tRNA synthetase OS=Leptospira interrogans se... [more]
SYK_BACST8.858e-1731.13Lysyl-tRNA synthetase OS=Bacillus stearothermophil... [more]
SYK_BACHD1.157e-1630.46Lysyl-tRNA synthetase OS=Bacillus halodurans GN=ly... [more]
SYK_THEM41.511e-1633.77Lysyl-tRNA synthetase OS=Thermosipho melanesiensis... [more]
SYK_PROM41.511e-1634.19Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_GRAFK1.511e-1631.13Lysyl-tRNA synthetase OS=Gramella forsetii (strain... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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