CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig371 contig Csv1_Contig371:1..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_ANAVT (Lysyl-tRNA synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=lysS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.511e-16
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +++ + +++ G+ +I Y           +D TPP+RR+ M + +++   L         EA     +A +         QT  ++L+      +E   + P+F+I++P  +SPLAK HRS+PGL ERFELFI   E  N+++EL DPI
Sbjct:  288 TEGIITTVAQDVLGTLQITYQGE-------TVDLTPPWRRVTMHDLVKEYTGLDFHSFQTLEEAKSASKNAGIP---GVDEAQTIGKILNLAFEEKVEANLIQPTFVIDYPVEISPLAKPHRSQPGLVERFELFIVGRETANSFSELTDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THEPX (Lysyl-tRNA synthetase OS=Thermoanaerobacter sp. (strain X514) GN=lysS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.973e-16
Identity = 45/151 (29.80%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE++ + + +++ G+ KI Y          EID TPP++RI MV+ +++   +    D   V+A+    +   + +++         ++  +    +E+  + P+F++++P  +SPLAK     P  T RFE FI   EV NA++ELNDPI
Sbjct:  288 TEQLFAYVAQKVNGTTKIVYQGT-------EIDLTPPWKRITMVDAIKEYVGV----DFNEVKADAEAVEIAKRLNLETKEGMKKGEVIALVFDELVEQHLIQPTFVMDYPVEISPLAKRKHDNPAFTSRFEAFIYGREVANAFSELNDPI 427          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BACSK (Lysyl-tRNA synthetase OS=Bacillus clausii (strain KSM-K16) GN=lysS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.577e-16
Identity = 44/151 (29.14%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +++ + KE+ G+  ++Y  +        ++  P ++R+ MV+ +++   +   + ++  EA     +      +      T   ++++   HF+EET + P+F+  HP  +SPLAK +   P  T+RFELFI   E  NA++ELNDPI
Sbjct:  289 TEGVIAHIAKEVLGTTTVQYGEH-------TVELAPSWKRVHMVDAIKEKTGVDFWQQMSDGEARALAKE----HGVPVKETMTFGHVVNEFFEHFIEETLIQPTFVYGHPLAISPLAKKNEEDPRFTDRFELFIVGREHANAFSELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_MYCPE (Lysyl-tRNA synthetase OS=Mycoplasma penetrans GN=lysS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.366e-16
Identity = 50/139 (35.97%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   56 KYHSNGLDKDPI-----EIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTT-ARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            KY +  L K  +     EI  T  FRRI MV+ +++   +    D   V++N+   +   K ++K    Q+T   +++     F E  C+ P+F+  HP  +SPL+K     PG T+RFELFIN  E  NA+ ELNDPI
Sbjct:  284 KYVAKSLKKPVVKMGENEIYLTQKFRRIHMVDFIKQETGV----DFWEVKSNQEAQELAKKHNVKFEKHQSTLGHIINLFFEEFCEAKCIQPTFVYGHPIDVSPLSKKDYKNPGFTKRFELFINTKEYANAFAELNDPI 418          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LISIN (Lysyl-tRNA synthetase OS=Listeria innocua GN=lysS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.366e-16
Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E ++S + K++ G+ KI Y          ++D TP +RRI M + +++   +    D  +V +++   +   K D+      T   +L++    ++EE  + P+F+  HP  +SPLAK ++     T+RFELFI   E  NA++ELNDPI
Sbjct:  289 EGLVSTVCKQVNGTTKITYGE-------YDVDLTPNWRRIHMADAVKEYVGV----DFWNVTSDEEAHELAKKHDVAVTEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISPLAKKNKEDERFTDRFELFIVGREHANAFSELNDPI 427          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LACPL (Lysyl-tRNA synthetase OS=Lactobacillus plantarum GN=lysS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.366e-16
Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +     + +T    + YH         ++DF  PF++I MV+ +++   +   + ++  +A K   +  VK++    P      +++     F+E+T   P+F+  HP  +SPLAK +   P  T+RFELFI  +E  NA++ELNDPI
Sbjct:  287 TEGIFKAAAQAVTDDGIVTYHDQ-------KVDFNQPFKQIHMVDAIKEKTGIDFWQPMSIEDAQKLADEHHVKYE----PYWKVGHIINAFFEEFVEDTLNEPTFVYGHPVEISPLAKKNEEDPRFTDRFELFILGNEYANAFSELNDPI 426          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_ANASP (Lysyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120) GN=lysS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.366e-16
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +++ + +++ G+ +I Y           +D TPP+RR+ M + +++   L         EA     +A +         QT  ++L+      +E   + P+F+I++P  +SPLAK HRS+PGL ERFELFI   E  N+++EL DPI
Sbjct:  288 TEGIITTVAQDVLGTLQITYQGE-------TVDLTPPWRRVTMHDLVKEYTGLDFHSFQTLEEAKSAGKNAGIP---GVDEAQTIGKILNLAFEEKVETKLIQPTFVIDYPVEISPLAKPHRSQPGLVERFELFIVGRETANSFSELTDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THEP3 (Lysyl-tRNA synthetase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=lysS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.396e-16
Identity = 45/151 (29.80%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE++ + + +++ G  KI Y          EID TPP++RI MV+ +++   +    D   V+ ++   +   K +++         ++  +    +E+  + P+F++++P  +SPLAK     P  T RFE FI   EV NA++ELNDPI
Sbjct:  288 TEQLFAYVAQKVNGITKIVYQGT-------EIDLTPPWKRITMVDAIKEYVGV----DFNEVKTDEEAIEIAKKLNLETKEGMKKGEVIALVFDELVEQHLIQPTFVMDYPVEISPLAKRKHDNPAFTSRFEAFIYGREVANAFSELNDPI 427          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PROMA (Lysyl-tRNA synthetase OS=Prochlorococcus marinus GN=lysS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.396e-16
Identity = 50/153 (32.68%), Postives = 84/153 (54.90%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADA-CVKFDIKCPPP-QTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+++S +  EI GS KI Y         + +D TPP+RR+ M E + +   +    D  + + ++  A +  +   ++ P    +  RL+++     +E   + P+F+I++P  +SPLA+ HR K  + ERFELFI   E  NA++EL DPI
Sbjct:  287 TEELISSVCIEICGSTKISYQD-------VSLDLTPPWRRVTMQELVLEATGI----DFDNFDGDQEKASSEMINLGLEVPSTADSVGRLMNEAFEQKVEPNLIQPTFVIDYPIDISPLARKHRCKEDMVERFELFIAGRETANAFSELIDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_NOSP7 (Lysyl-tRNA synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lysS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.396e-16
Identity = 53/155 (34.19%), Postives = 82/155 (52.90%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEE----TCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +++ + +E+ G+ +I Y           ID TPP+RR+ M + +++   L         EA     +A +       P    A+ + KL+    EE      + P+F+I++P  +SPLAK HRS+PGL ERFELFI   E  N+++EL DPI
Sbjct:  288 TEGIITTVAQEVLGTLQITYQGE-------PIDLTPPWRRVTMHDLVKEFTGLDFNSFQTLEEAKTASKNAGI-------PGVDEAKSIGKLLNLAFEEKVEANLIQPTFVIDYPVEISPLAKPHRSQPGLVERFELFIVGRETGNSFSELTDPI 428          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_ANAVT1.511e-1632.45Lysyl-tRNA synthetase OS=Anabaena variabilis (stra... [more]
SYK_THEPX1.973e-1629.80Lysyl-tRNA synthetase OS=Thermoanaerobacter sp. (s... [more]
SYK_BACSK2.577e-1629.14Lysyl-tRNA synthetase OS=Bacillus clausii (strain ... [more]
SYK_MYCPE3.366e-1635.97Lysyl-tRNA synthetase OS=Mycoplasma penetrans GN=l... [more]
SYK_LISIN3.366e-1631.33Lysyl-tRNA synthetase OS=Listeria innocua GN=lysS ... [more]
SYK_LACPL3.366e-1630.46Lysyl-tRNA synthetase OS=Lactobacillus plantarum G... [more]
SYK_ANASP3.366e-1632.45Lysyl-tRNA synthetase OS=Anabaena sp. (strain PCC ... [more]
SYK_THEP34.396e-1629.80Lysyl-tRNA synthetase OS=Thermoanaerobacter pseude... [more]
SYK_PROMA4.396e-1632.68Lysyl-tRNA synthetase OS=Prochlorococcus marinus G... [more]
SYK_NOSP74.396e-1634.19Lysyl-tRNA synthetase OS=Nostoc punctiforme (strai... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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