CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_FUSNN (Lysyl-tRNA synthetase OS=Fusobacterium nucleatum subsp. nucleatum GN=lysS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.741e-16
Identity = 47/149 (31.54%), Postives = 79/149 (53.02%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            E ++S + +EI G+  I+Y       D +++     F R+ MV+ ++++  +   K++   EA K   +  V+         +   ++++      EE  + P+F+  HP  +SPLAK +   P  T+RFELFINK E  NA+TELNDP
Sbjct:  283 EGIISSVCQEINGTTDIEY-------DGVQLSLKN-FNRVHMVDMIKEVTGVDFWKEMTFEEAKKLAKEHHVEV---ADHMNSVGHIINEFFEQKCEEKVIQPTFVYGHPVEISPLAKRNEDNPNFTDRFELFINKREYANAFTELNDP 420          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_AERS4 (Lysyl-tRNA synthetase OS=Aeromonas salmonicida (strain A449) GN=lysS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.741e-16
Identity = 48/149 (32.21%), Postives = 81/149 (54.36%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE++L  + ++I G  KI+Y   G  ++ + IDF  PF+R+ MV+ + K      P DLA++E+ K +A       I+         ++  +    +E   + P+FI  +P  +SPLA+ +   P +T+RFE FI   E+ N ++ELND
Sbjct:  295 TEELLRTLAQDILGDTKIRYAKEG--EEGLTIDFGQPFQRLTMVDSILKFNPDVTPADLATLESAKAVAK---HLHIELMKGWELGHVITAIFEETVEHMLLQPTFITEYPAAVSPLARRNDVNPDVTDRFEFFIGGRELANGFSELND 438          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK2_METAC (Lysyl-tRNA synthetase 2 OS=Methanosarcina acetivorans GN=lysS2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.499e-16
Identity = 54/151 (35.76%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++S ++  +TG Y++K   N        I+   P++RI M   L++ A L +     S+E  K +A      D +    ++    L  L    +E+  VNP+FI + P   SPLAK HR K G  ERFELF+N  E+ N Y+ELNDP+
Sbjct:  301 TEALISELVFRLTGGYEVKMGEN-------TINLRSPWKRISMEGALKEYAGLDVFSH--SLEELKQIAIQNRIEDYE--KAKSHGEFLALLFEGLVEDKLVNPTFIYDFPVENSPLAKNHREKEGFVERFELFLNGWELANGYSELNDPL 440          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRSV (Lysyl-tRNA synthetase OS=Streptococcus sanguinis (strain SK36) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.793e-16
Identity = 49/154 (31.82%), Postives = 77/154 (50.00%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQ---TTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++      + G   + Y          EI    PF+R+ MV+ +++I  +   +D++  EA      A +  + K P  +       +++     F+EET + P+F+  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHAAVSVNGDGPVNYQGT-------EIKINEPFKRVHMVDAIKEITGVDFWQDMSFEEA------AALAQEKKVPLEKHFTEVGHVINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDPRFTDRFELFIMTKEYANAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRPS (Lysyl-tRNA synthetase OS=Streptococcus pneumoniae (strain CGSP14) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.793e-16
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++    K + G   + Y          EI    PF+R+ MV+ +++I  +   +D+   EA    A+  V  +           +++     F+EET + P+F+  HP  +SPLAK +      T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHAAKSVKGDGPVNYQGT-------EIKINKPFKRVHMVDAIKEITGVDFWQDMTLEEAKAIAAEKKVPVEKHYTE---VGHIINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LISMO (Lysyl-tRNA synthetase OS=Listeria monocytogenes GN=lysS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.793e-16
Identity = 46/150 (30.67%), Postives = 81/150 (54.00%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E ++S + K++ G+ +I Y          ++D TP +RRI M + +++   +    D  +V +++   +   K D+      T   +L++    ++EE  + P+F+  HP  +SPLAK ++     T+RFELFI   E  NA++ELNDPI
Sbjct:  289 EGLVSTVCKQVNGTTEITYGE-------YKVDLTPNWRRIHMADAVKEYVGV----DFWNVTSDEEARELAKKHDVPVTEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISPLAKKNKEDERFTDRFELFIVGREHANAFSELNDPI 427          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LEPBL (Lysyl-tRNA synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.793e-16
Identity = 50/150 (33.33%), Postives = 85/150 (56.67%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE++++ + ++I G+ KI+Y   G D     ID +PP+R+I   + +++ + +      +  EA K  ++  V    KC    T  ++ D++     E   + P FII++P+ +SPLAK +  KPG  ERFE ++   E+ NA+TELNDP
Sbjct:  286 TERLITHLAQKIHGALKIQY---GKDL----IDLSPPWRKITYTDIIKEYSGIDFSLITSLEEAKKKASELNVDVS-KC---NTIWKVADEVFSEKAEPNLIQPVFIIDYPKELSPLAKSNPDKPGYVERFEPYVAGREIGNAFTELNDP 424          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LEPBJ (Lysyl-tRNA synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.793e-16
Identity = 50/150 (33.33%), Postives = 85/150 (56.67%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE++++ + ++I G+ KI+Y   G D     ID +PP+R+I   + +++ + +      +  EA K  ++  V    KC    T  ++ D++     E   + P FII++P+ +SPLAK +  KPG  ERFE ++   E+ NA+TELNDP
Sbjct:  286 TERLITHLAQKIHGALKIQY---GKDL----IDLSPPWRKITYTDIIKEYSGIDFSLITSLEEAKKKASELNVDVS-KC---NTIWKVADEVFSEKAEPNLIQPVFIIDYPKELSPLAKSNPDKPGYVERFEPYVAGREIGNAFTELNDP 424          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LACLS (Lysyl-tRNA synthetase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.793e-16
Identity = 48/152 (31.58%), Postives = 81/152 (53.29%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTA-RLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +   + K + G   ++Y       D  EI+    F+R+ MV+ ++++A +    ++   EA     +     DI      T+   ++++    ++EET + P+F+  HP+ +SPLAK +   P  T+RFELFIN  E  NA++ELNDPI
Sbjct:  286 TEGIFQHVAKTVVGQDVLEY-------DGKEINVGGKFKRVHMVDAIKEVAGVDFWPEMTFEEATALAKE----HDIHVEKHFTSVGHIINEFFEKYVEETLIQPTFVFGHPKEISPLAKMNEKDPRFTDRFELFINGKEYANAFSELNDPI 426          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LACLM (Lysyl-tRNA synthetase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.793e-16
Identity = 48/152 (31.58%), Postives = 81/152 (53.29%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTA-RLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +   + K + G   ++Y       D  EI+    F+R+ MV+ ++++A +    ++   EA     +     DI      T+   ++++    ++EET + P+F+  HP+ +SPLAK +   P  T+RFELFIN  E  NA++ELNDPI
Sbjct:  286 TEGIFQHVAKTVVGQDVLEY-------DGKEINVGGKFKRVHMVDAIKEVAGVDFWPEMTFEEATALAKE----HDIHVEKHFTSVGHIINEFFEKYVEETLIQPTFVFGHPKEISPLAKMNEKDPRFTDRFELFINGKEYANAFSELNDPI 426          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_FUSNN5.741e-1631.54Lysyl-tRNA synthetase OS=Fusobacterium nucleatum s... [more]
SYK_AERS45.741e-1632.21Lysyl-tRNA synthetase OS=Aeromonas salmonicida (st... [more]
SYK2_METAC7.499e-1635.76Lysyl-tRNA synthetase 2 OS=Methanosarcina acetivor... [more]
SYK_STRSV9.793e-1631.82Lysyl-tRNA synthetase OS=Streptococcus sanguinis (... [more]
SYK_STRPS9.793e-1631.79Lysyl-tRNA synthetase OS=Streptococcus pneumoniae ... [more]
SYK_LISMO9.793e-1630.67Lysyl-tRNA synthetase OS=Listeria monocytogenes GN... [more]
SYK_LEPBL9.793e-1633.33Lysyl-tRNA synthetase OS=Leptospira borgpetersenii... [more]
SYK_LEPBJ9.793e-1633.33Lysyl-tRNA synthetase OS=Leptospira borgpetersenii... [more]
SYK_LACLS9.793e-1631.58Lysyl-tRNA synthetase OS=Lactococcus lactis subsp.... [more]
SYK_LACLM9.793e-1631.58Lysyl-tRNA synthetase OS=Lactococcus lactis subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
back to top