CB322194

Overview
NameCB322194
Unique NameCB322194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length182
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12012 contig Csv1_Contig12012:640..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SHEAM (Thiamine biosynthesis protein thiC OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.531e-19
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVARGRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  198 FVRDEVARGRAIIPANINHPEAEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 256          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_BAUCH (Thiamine biosynthesis protein thiC OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=thiC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.531e-19
Identity = 48/59 (81.36%), Postives = 50/59 (84.75%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIPSN  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ WAT
Sbjct:  197 FVRQEVAAGRAIIPSNINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWAT 255          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PSEMY (Thiamine biosynthesis protein thiC OS=Pseudomonas mendocina (strain ymp) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.305e-19
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = -3
Query:   10 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQW 180
            FVR+EVARGRAIIP+N  H+ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W
Sbjct:  194 FVRSEVARGRAIIPANINHVELEPMIIGRNFLVKINGNIGNSALGSSIEEEVAKLTW 250          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_LEPBL (Thiamine biosynthesis protein thiC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.305e-19
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR E+A GRAI+PSN+ H ELEPMI+GRNFLVK+NANIGNSA+ SSIEEEV K+ WA
Sbjct:   90 FVRLEIACGRAILPSNRNHPELEPMIIGRNFLVKINANIGNSALGSSIEEEVEKLHWA 147          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_LEPBJ (Thiamine biosynthesis protein thiC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.305e-19
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR E+A GRAI+PSN+ H ELEPMI+GRNFLVK+NANIGNSA+ SSIEEEV K+ WA
Sbjct:   90 FVRLEIACGRAILPSNRNHPELEPMIIGRNFLVKINANIGNSALGSSIEEEVEKLHWA 147          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_CELJU (Thiamine biosynthesis protein thiC OS=Cellvibrio japonicus (strain Ueda107) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.305e-19
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = -3
Query:   10 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQW 180
            FVR+EVARGRAIIP+N  H+ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W
Sbjct:  194 FVRSEVARGRAIIPANINHVELEPMIIGRNFLVKINGNIGNSALGSSIEEEVEKLTW 250          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_VIBPA (Thiamine biosynthesis protein thiC OS=Vibrio parahaemolyticus GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIPSN  H E EPMI+GRNFLVKVNANIGNS+V SSIEEEV K+ WAT
Sbjct:  198 FVRKEVAEGRAIIPSNINHPESEPMIIGRNFLVKVNANIGNSSVTSSIEEEVEKLVWAT 256          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_VIBHB (Thiamine biosynthesis protein thiC OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIPSN  H E EPMI+GRNFLVKVNANIGNS+V SSIEEEV K+ WAT
Sbjct:  198 FVRKEVAEGRAIIPSNINHPESEPMIIGRNFLVKVNANIGNSSVTSSIEEEVEKLVWAT 256          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SHEWM (Thiamine biosynthesis protein thiC OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVARGRAIIP N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  198 FVRQEVARGRAIIPLNINHPEAEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 256          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SHESH (Thiamine biosynthesis protein thiC OS=Shewanella sediminis (strain HAW-EB3) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVARGRAIIP N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  198 FVRQEVARGRAIIPLNINHPEAEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 256          
The following BLAST results are available for this feature:
BLAST of CB322194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
THIC_SHEAM2.531e-1979.66Thiamine biosynthesis protein thiC OS=Shewanella a... [more]
THIC_BAUCH2.531e-1981.36Thiamine biosynthesis protein thiC OS=Baumannia ci... [more]
THIC_PSEMY3.305e-1977.19Thiamine biosynthesis protein thiC OS=Pseudomonas ... [more]
THIC_LEPBL3.305e-1975.86Thiamine biosynthesis protein thiC OS=Leptospira b... [more]
THIC_LEPBJ3.305e-1975.86Thiamine biosynthesis protein thiC OS=Leptospira b... [more]
THIC_CELJU3.305e-1977.19Thiamine biosynthesis protein thiC OS=Cellvibrio j... [more]
THIC_VIBPA4.317e-1979.66Thiamine biosynthesis protein thiC OS=Vibrio parah... [more]
THIC_VIBHB4.317e-1979.66Thiamine biosynthesis protein thiC OS=Vibrio harve... [more]
THIC_SHEWM4.317e-1979.66Thiamine biosynthesis protein thiC OS=Shewanella w... [more]
THIC_SHESH4.317e-1979.66Thiamine biosynthesis protein thiC OS=Shewanella s... [more]

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Properties
Property NameValue
Genbank descriptionEST0316 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB275 similar to putative thiamine biosynthesis protein (acc# AAK26130), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322194 ID=CB322194; Name=CB322194; organism=Citrus sinensis; type=EST; length=182bp
CATGGTTGCCCATTGAACCTTGTAAACTTCTTCCTCAATAGAGCTAGCTA
CAGCAGAATTACCAATATTTGCATTAACTTTGACCAAAAAATTTCTTCCG
ACTATCATTGGTTCTAGTTCCAAGTGCTTCTTGTTGGAAGGAATGATTGC
TCGGCCACGAGCAACCTCTGCCCTCACAAATT
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