CB322194

Overview
NameCB322194
Unique NameCB322194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length182
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12012 contig Csv1_Contig12012:640..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SHEHH (Thiamine biosynthesis protein thiC OS=Shewanella halifaxensis (strain HAW-EB4) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVARGRAIIP N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  198 FVRQEVARGRAIIPLNINHPEAEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 256          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_OLICO (Thiamine biosynthesis protein thiC OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR+E+ARGRAIIP N  H ELEPMI+GRNFL K+NANIGNSAV SS+EEEV K+ WA
Sbjct:  184 FVRSEIARGRAIIPCNINHAELEPMIIGRNFLTKINANIGNSAVTSSVEEEVDKMVWA 241          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_MYXXD (Thiamine biosynthesis protein thiC OS=Myxococcus xanthus (strain DK 1622) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR E+ARGRAIIP+N  H ELEPMI+GRNFLVK+NANIGNSAV SSIEEEV K+ W+
Sbjct:  194 FVRDEIARGRAIIPANINHPELEPMIIGRNFLVKINANIGNSAVTSSIEEEVEKMVWS 251          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_BRASB (Thiamine biosynthesis protein thiC OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR+E+ARGRAIIP N  H ELEPMI+GRNFL K+NANIGNSAV SS+EEEV K+ WA
Sbjct:  184 FVRSEIARGRAIIPCNINHAELEPMIIGRNFLTKINANIGNSAVTSSVEEEVDKMVWA 241          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_BRAJA (Thiamine biosynthesis protein thiC OS=Bradyrhizobium japonicum GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR+E+ARGRAIIP N  H ELEPMI+GRNFL K+NANIGNSAV SS+EEEV K+ WA
Sbjct:  184 FVRSEIARGRAIIPCNINHSELEPMIIGRNFLTKINANIGNSAVTSSVEEEVEKMVWA 241          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_ACIBY (Thiamine biosynthesis protein thiC OS=Acinetobacter baumannii (strain AYE) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H ELEPMI+GRNFLVK+NANIGNSA+ SSI+EEV K+ WAT
Sbjct:  194 FVRQEVAEGRAIIPANINHPELEPMIIGRNFLVKINANIGNSALGSSIDEEVAKMTWAT 252          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_ACIBT (Thiamine biosynthesis protein thiC OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=thiC PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H ELEPMI+GRNFLVK+NANIGNSA+ SSI+EEV K+ WAT
Sbjct:  194 FVRQEVAEGRAIIPANINHPELEPMIIGRNFLVKINANIGNSALGSSIDEEVAKMTWAT 252          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_ACIBS (Thiamine biosynthesis protein thiC OS=Acinetobacter baumannii (strain SDF) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H ELEPMI+GRNFLVK+NANIGNSA+ SSI+EEV K+ WAT
Sbjct:  194 FVRQEVAEGRAIIPANINHPELEPMIIGRNFLVKINANIGNSALGSSIDEEVAKMTWAT 252          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_ACIBC (Thiamine biosynthesis protein thiC OS=Acinetobacter baumannii (strain ACICU) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H ELEPMI+GRNFLVK+NANIGNSA+ SSI+EEV K+ WAT
Sbjct:  194 FVRQEVAEGRAIIPANINHPELEPMIIGRNFLVKINANIGNSALGSSIDEEVAKMTWAT 252          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_ACIB5 (Thiamine biosynthesis protein thiC OS=Acinetobacter baumannii (strain AB0057) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H ELEPMI+GRNFLVK+NANIGNSA+ SSI+EEV K+ WAT
Sbjct:  194 FVRQEVAEGRAIIPANINHPELEPMIIGRNFLVKINANIGNSALGSSIDEEVAKMTWAT 252          
The following BLAST results are available for this feature:
BLAST of CB322194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
THIC_SHEHH4.317e-1979.66Thiamine biosynthesis protein thiC OS=Shewanella h... [more]
THIC_OLICO4.317e-1975.86Thiamine biosynthesis protein thiC OS=Oligotropha ... [more]
THIC_MYXXD4.317e-1977.59Thiamine biosynthesis protein thiC OS=Myxococcus x... [more]
THIC_BRASB4.317e-1975.86Thiamine biosynthesis protein thiC OS=Bradyrhizobi... [more]
THIC_BRAJA4.317e-1975.86Thiamine biosynthesis protein thiC OS=Bradyrhizobi... [more]
THIC_ACIBY4.317e-1976.27Thiamine biosynthesis protein thiC OS=Acinetobacte... [more]
THIC_ACIBT4.317e-1976.27Thiamine biosynthesis protein thiC OS=Acinetobacte... [more]
THIC_ACIBS4.317e-1976.27Thiamine biosynthesis protein thiC OS=Acinetobacte... [more]
THIC_ACIBC4.317e-1976.27Thiamine biosynthesis protein thiC OS=Acinetobacte... [more]
THIC_ACIB54.317e-1976.27Thiamine biosynthesis protein thiC OS=Acinetobacte... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0316 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB275 similar to putative thiamine biosynthesis protein (acc# AAK26130), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322194 ID=CB322194; Name=CB322194; organism=Citrus sinensis; type=EST; length=182bp
CATGGTTGCCCATTGAACCTTGTAAACTTCTTCCTCAATAGAGCTAGCTA
CAGCAGAATTACCAATATTTGCATTAACTTTGACCAAAAAATTTCTTCCG
ACTATCATTGGTTCTAGTTCCAAGTGCTTCTTGTTGGAAGGAATGATTGC
TCGGCCACGAGCAACCTCTGCCCTCACAAATT
back to top