CB322194

Overview
NameCB322194
Unique NameCB322194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length182
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_ANADF (Thiamine biosynthesis protein thiC OS=Anaeromyxobacter sp. (strain Fw109-5) GN=thiC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = -3
Query:   16 VRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKV 177
            VR EVARGR +IP+N KH ELEP+ +G     K+NANIGNSAV S ++EE+ K+
Sbjct:   44 VRQEVARGRMVIPANLKHPELEPIAIGIAATCKINANIGNSAVTSDVDEELRKL 97          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_HALMA (Thiamine biosynthesis protein thiC OS=Haloarcula marismortui GN=thiC PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.651e-11
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR +VA G+A+IP+N  H  L+PMI+GR F  KVNANIGNS   S IE E+ K+  A
Sbjct:   29 FVRQQVADGQAVIPANVGHDSLDPMIIGREFATKVNANIGNSEETSDIEGELEKLHTA 86          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_NATPD (Thiamine biosynthesis protein thiC OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=thiC PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.381e-11
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR +VA G+A+IP+N  H  L+PMI+GR F  KVNANIGNS  AS  E E+ K+  A
Sbjct:   30 FVRQQVADGQAVIPANHGHDALDPMIIGREFATKVNANIGNSEPASGPEAELQKLHTA 87          
The following BLAST results are available for this feature:
BLAST of CB322194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
THIC_ANADF3.313e-1159.26Thiamine biosynthesis protein thiC OS=Anaeromyxoba... [more]
THIC_HALMA5.651e-1156.90Thiamine biosynthesis protein thiC OS=Haloarcula m... [more]
THIC_NATPD7.381e-1156.90Thiamine biosynthesis protein thiC OS=Natronomonas... [more]

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Properties
Property NameValue
Genbank descriptionEST0316 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB275 similar to putative thiamine biosynthesis protein (acc# AAK26130), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322194 ID=CB322194; Name=CB322194; organism=Citrus sinensis; type=EST; length=182bp
CATGGTTGCCCATTGAACCTTGTAAACTTCTTCCTCAATAGAGCTAGCTA
CAGCAGAATTACCAATATTTGCATTAACTTTGACCAAAAAATTTCTTCCG
ACTATCATTGGTTCTAGTTCCAAGTGCTTCTTGTTGGAAGGAATGATTGC
TCGGCCACGAGCAACCTCTGCCCTCACAAATT
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