CB322194

Overview
NameCB322194
Unique NameCB322194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length182
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SALAR (Thiamine biosynthesis protein thiC OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ WAT
Sbjct:  202 FVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWAT 260          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PSEU2 (Thiamine biosynthesis protein thiC OS=Pseudomonas syringae pv. syringae (strain B728a) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = -3
Query:   10 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQW 180
            FVR E+ARGRAIIP+N  H+ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W
Sbjct:  196 FVREEIARGRAIIPANINHVELEPMIIGRNFLVKINGNIGNSALGSSIEEEVAKLTW 252          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PSESM (Thiamine biosynthesis protein thiC OS=Pseudomonas syringae pv. tomato GN=thiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = -3
Query:   10 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQW 180
            FVR E+ARGRAIIP+N  H+ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W
Sbjct:  196 FVREEIARGRAIIPANINHVELEPMIIGRNFLVKINGNIGNSALGSSIEEEVAKLTW 252          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PSEPF (Thiamine biosynthesis protein thiC OS=Pseudomonas fluorescens (strain Pf0-1) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = -3
Query:   10 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQW 180
            FVR E+ARGRAIIP+N  H+ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W
Sbjct:  196 FVREEIARGRAIIPANINHVELEPMIIGRNFLVKINGNIGNSALGSSIEEEVAKLTW 252          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PSEHT (Thiamine biosynthesis protein thiC OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR E+ARGRAI+P+N  H E EPMIVGRNFLVKVNANIGNS+V+SSIEEEV K+ W+T
Sbjct:  204 FVRDEIARGRAILPNNINHPETEPMIVGRNFLVKVNANIGNSSVSSSIEEEVEKMVWST 262          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PSEF5 (Thiamine biosynthesis protein thiC OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = -3
Query:   10 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQW 180
            FVR E+ARGRAIIP+N  H+ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W
Sbjct:  196 FVREEIARGRAIIPANINHVELEPMIIGRNFLVKINGNIGNSALGSSIEEEVAKLTW 252          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PSE14 (Thiamine biosynthesis protein thiC OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = -3
Query:   10 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQW 180
            FVR E+ARGRAIIP+N  H+ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W
Sbjct:  196 FVREEIARGRAIIPANINHVELEPMIIGRNFLVKINGNIGNSALGSSIEEEVAKLTW 252          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_JANMA (Thiamine biosynthesis protein thiC OS=Janthinobacterium sp. (strain Marseille) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR+E+ARGRAIIP+N  H E+EPMI+GRNFLVK+NANIGNSAV SSI EEV K+ WA
Sbjct:  205 FVRSEIARGRAIIPANINHPEIEPMIIGRNFLVKINANIGNSAVTSSIGEEVEKMTWA 262          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_HERAR (Thiamine biosynthesis protein thiC OS=Herminiimonas arsenicoxydans GN=thiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR+E+ARGRAIIP+N  H E+EPMI+GRNFLVK+NANIGNSAV SSI EEV K+ WA
Sbjct:  205 FVRSEIARGRAIIPANINHPEIEPMIIGRNFLVKINANIGNSAVTSSIGEEVEKMTWA 262          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_CORDI (Thiamine biosynthesis protein thiC OS=Corynebacterium diphtheriae GN=thiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR+E+ARGRAIIP+N  H E EPMI+GR FL K+NANIGNSAV SSIEEEV K++WAT
Sbjct:  155 FVRSEIARGRAIIPNNINHPESEPMIIGRKFLTKINANIGNSAVTSSIEEEVSKLRWAT 213          
The following BLAST results are available for this feature:
BLAST of CB322194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
THIC_SALAR7.364e-1979.66Thiamine biosynthesis protein thiC OS=Salmonella a... [more]
THIC_PSEU27.364e-1975.44Thiamine biosynthesis protein thiC OS=Pseudomonas ... [more]
THIC_PSESM7.364e-1975.44Thiamine biosynthesis protein thiC OS=Pseudomonas ... [more]
THIC_PSEPF7.364e-1975.44Thiamine biosynthesis protein thiC OS=Pseudomonas ... [more]
THIC_PSEHT7.364e-1976.27Thiamine biosynthesis protein thiC OS=Pseudoaltero... [more]
THIC_PSEF57.364e-1975.44Thiamine biosynthesis protein thiC OS=Pseudomonas ... [more]
THIC_PSE147.364e-1975.44Thiamine biosynthesis protein thiC OS=Pseudomonas ... [more]
THIC_JANMA7.364e-1975.86Thiamine biosynthesis protein thiC OS=Janthinobact... [more]
THIC_HERAR7.364e-1975.86Thiamine biosynthesis protein thiC OS=Herminiimona... [more]
THIC_CORDI7.364e-1974.58Thiamine biosynthesis protein thiC OS=Corynebacter... [more]

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Properties
Property NameValue
Genbank descriptionEST0316 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB275 similar to putative thiamine biosynthesis protein (acc# AAK26130), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322194 ID=CB322194; Name=CB322194; organism=Citrus sinensis; type=EST; length=182bp
CATGGTTGCCCATTGAACCTTGTAAACTTCTTCCTCAATAGAGCTAGCTA
CAGCAGAATTACCAATATTTGCATTAACTTTGACCAAAAAATTTCTTCCG
ACTATCATTGGTTCTAGTTCCAAGTGCTTCTTGTTGGAAGGAATGATTGC
TCGGCCACGAGCAACCTCTGCCCTCACAAATT
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