CB322194

Overview
NameCB322194
Unique NameCB322194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length182
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12012 contig Csv1_Contig12012:640..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_COLP3 (Thiamine biosynthesis protein thiC OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVARGRAIIP N  H E EPMI+GRNFL+KVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  211 FVRDEVARGRAIIPVNINHPECEPMIIGRNFLIKVNANIGNSAVTSSIEEEVEKLVWST 269          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_VIBVY (Thiamine biosynthesis protein thiC OS=Vibrio vulnificus (strain YJ016) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIPSN  H E EPMI+GRNFLVKVNANIGNS+V SSIEEEV K+ W+T
Sbjct:  198 FVRREVAEGRAIIPSNINHPESEPMIIGRNFLVKVNANIGNSSVTSSIEEEVEKLVWST 256          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_VIBVU (Thiamine biosynthesis protein thiC OS=Vibrio vulnificus GN=thiC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIPSN  H E EPMI+GRNFLVKVNANIGNS+V SSIEEEV K+ W+T
Sbjct:  198 FVRREVAEGRAIIPSNINHPESEPMIIGRNFLVKVNANIGNSSVTSSIEEEVEKLVWST 256          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SACD2 (Thiamine biosynthesis protein thiC OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR+EVA GRAIIP+N  H ELEPMI+GRNFLVK+N NIGNSAV SSIEEEV K+ W T
Sbjct:  196 FVRSEVACGRAIIPANINHPELEPMIIGRNFLVKINGNIGNSAVTSSIEEEVAKLTWGT 254          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_RHOFD (Thiamine biosynthesis protein thiC OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR EVARGRAIIP+N  H E+EPM++GRNFLVK+NANIGNSAV SSIEEEV K+ W+
Sbjct:  189 FVRDEVARGRAIIPANINHPEVEPMVIGRNFLVKINANIGNSAVTSSIEEEVEKLVWS 246          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PSEAE (Thiamine biosynthesis protein thiC OS=Pseudomonas aeruginosa GN=thiC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = -3
Query:   10 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQW 180
            FVR EVARGRAIIP+N  H ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W
Sbjct:  194 FVREEVARGRAIIPANINHTELEPMIIGRNFLVKINGNIGNSALGSSIEEEVEKLTW 250          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PSEAB (Thiamine biosynthesis protein thiC OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = -3
Query:   10 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQW 180
            FVR EVARGRAIIP+N  H ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W
Sbjct:  194 FVREEVARGRAIIPANINHTELEPMIIGRNFLVKINGNIGNSALGSSIEEEVEKLTW 250          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PSEA8 (Thiamine biosynthesis protein thiC OS=Pseudomonas aeruginosa (strain LESB58) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = -3
Query:   10 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQW 180
            FVR EVARGRAIIP+N  H ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W
Sbjct:  194 FVREEVARGRAIIPANINHTELEPMIIGRNFLVKINGNIGNSALGSSIEEEVEKLTW 250          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PSEA7 (Thiamine biosynthesis protein thiC OS=Pseudomonas aeruginosa (strain PA7) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = -3
Query:   10 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQW 180
            FVR EVARGRAIIP+N  H ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W
Sbjct:  194 FVREEVARGRAIIPANINHTELEPMIIGRNFLVKINGNIGNSALGSSIEEEVEKLTW 250          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_PARL1 (Thiamine biosynthesis protein thiC OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=thiC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR EVA GRAIIPSN  H ELEPMI+GRNFLVK+NANIGNSAVASS+ EEV K+ WA
Sbjct:  184 FVRDEVAAGRAIIPSNINHPELEPMIIGRNFLVKINANIGNSAVASSVAEEVDKMVWA 241          
The following BLAST results are available for this feature:
BLAST of CB322194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
THIC_COLP37.364e-1977.97Thiamine biosynthesis protein thiC OS=Colwellia ps... [more]
THIC_VIBVY9.617e-1977.97Thiamine biosynthesis protein thiC OS=Vibrio vulni... [more]
THIC_VIBVU9.617e-1977.97Thiamine biosynthesis protein thiC OS=Vibrio vulni... [more]
THIC_SACD29.617e-1976.27Thiamine biosynthesis protein thiC OS=Saccharophag... [more]
THIC_RHOFD9.617e-1975.86Thiamine biosynthesis protein thiC OS=Rhodoferax f... [more]
THIC_PSEAE9.617e-1977.19Thiamine biosynthesis protein thiC OS=Pseudomonas ... [more]
THIC_PSEAB9.617e-1977.19Thiamine biosynthesis protein thiC OS=Pseudomonas ... [more]
THIC_PSEA89.617e-1977.19Thiamine biosynthesis protein thiC OS=Pseudomonas ... [more]
THIC_PSEA79.617e-1977.19Thiamine biosynthesis protein thiC OS=Pseudomonas ... [more]
THIC_PARL19.617e-1979.31Thiamine biosynthesis protein thiC OS=Parvibaculum... [more]

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Properties
Property NameValue
Genbank descriptionEST0316 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB275 similar to putative thiamine biosynthesis protein (acc# AAK26130), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322194 ID=CB322194; Name=CB322194; organism=Citrus sinensis; type=EST; length=182bp
CATGGTTGCCCATTGAACCTTGTAAACTTCTTCCTCAATAGAGCTAGCTA
CAGCAGAATTACCAATATTTGCATTAACTTTGACCAAAAAATTTCTTCCG
ACTATCATTGGTTCTAGTTCCAAGTGCTTCTTGTTGGAAGGAATGATTGC
TCGGCCACGAGCAACCTCTGCCCTCACAAATT
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