CB322194

Overview
NameCB322194
Unique NameCB322194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length182
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SALTY (Thiamine biosynthesis protein thiC OS=Salmonella typhimurium GN=thiC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  202 FVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 260
[Close]
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SALTI (Thiamine biosynthesis protein thiC OS=Salmonella typhi GN=thiC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  202 FVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 260
[Close]
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SALPK (Thiamine biosynthesis protein thiC OS=Salmonella paratyphi A (strain AKU_12601) GN=thiC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  202 FVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 260
[Close]
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SALPC (Thiamine biosynthesis protein thiC OS=Salmonella paratyphi C (strain RKS4594) GN=thiC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  202 FVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 260
[Close]
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SALPB (Thiamine biosynthesis protein thiC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=thiC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  202 FVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 260
[Close]
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SALPA (Thiamine biosynthesis protein thiC OS=Salmonella paratyphi A GN=thiC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  202 FVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 260
[Close]
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SALNS (Thiamine biosynthesis protein thiC OS=Salmonella newport (strain SL254) GN=thiC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  202 FVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 260
[Close]
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SALHS (Thiamine biosynthesis protein thiC OS=Salmonella heidelberg (strain SL476) GN=thiC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  202 FVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 260
[Close]
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SALEP (Thiamine biosynthesis protein thiC OS=Salmonella enteritidis PT4 (strain P125109) GN=thiC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  202 FVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 260
[Close]
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SALDC (Thiamine biosynthesis protein thiC OS=Salmonella dublin (strain CT_02021853) GN=thiC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR EVA GRAIIP+N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  202 FVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 260
The following BLAST results are available for this feature:
BLAST of CB322194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
THIC_SALTY1.640e-1877.97Thiamine biosynthesis protein thiC OS=Salmonella t... [more]
THIC_SALTI1.640e-1877.97Thiamine biosynthesis protein thiC OS=Salmonella t... [more]
THIC_SALPK1.640e-1877.97Thiamine biosynthesis protein thiC OS=Salmonella p... [more]
THIC_SALPC1.640e-1877.97Thiamine biosynthesis protein thiC OS=Salmonella p... [more]
THIC_SALPB1.640e-1877.97Thiamine biosynthesis protein thiC OS=Salmonella p... [more]
THIC_SALPA1.640e-1877.97Thiamine biosynthesis protein thiC OS=Salmonella p... [more]
THIC_SALNS1.640e-1877.97Thiamine biosynthesis protein thiC OS=Salmonella n... [more]
THIC_SALHS1.640e-1877.97Thiamine biosynthesis protein thiC OS=Salmonella h... [more]
THIC_SALEP1.640e-1877.97Thiamine biosynthesis protein thiC OS=Salmonella e... [more]
THIC_SALDC1.640e-1877.97Thiamine biosynthesis protein thiC OS=Salmonella d... [more]

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Properties
Property NameValue
Genbank descriptionEST0316 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB275 similar to putative thiamine biosynthesis protein (acc# AAK26130), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322194 ID=CB322194; Name=CB322194; organism=Citrus sinensis; type=EST; length=182bp
CATGGTTGCCCATTGAACCTTGTAAACTTCTTCCTCAATAGAGCTAGCTA
CAGCAGAATTACCAATATTTGCATTAACTTTGACCAAAAAATTTCTTCCG
ACTATCATTGGTTCTAGTTCCAAGTGCTTCTTGTTGGAAGGAATGATTGC
TCGGCCACGAGCAACCTCTGCCCTCACAAATT
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