CB322198

Overview
NameCB322198
Unique NameCB322198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length119
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_NICSY (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nicotiana sylvestris GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPW MI+
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_NANDO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nandina domestica GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHSIFSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_MORIN (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHSIFSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_LIRTU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Liriodendron tulipifera GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHSIFSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_HELAN (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Helianthus annuus GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPW M+V
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMVV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_DRIGR (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Drimys granadensis GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHSIFSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_CHLSC (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Chloranthus spicatus GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHSIFSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_ATRBE (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Atropa belladonna GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPW MI+
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_SPIOL (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Spinacia oleracea GN=ndhD PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.963e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHSIFSPW MI+
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_NYMAL (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nymphaea alba GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.963e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+R+NMELLPHAHSIFSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLVRVNMELLPHAHSIFSPWLMIV 283          
The following BLAST results are available for this feature:
BLAST of CB322198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
NU4C_NICSY2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_NANDO2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_MORIN2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_LIRTU2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_HELAN2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_DRIGR2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CHLSC2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_ATRBE2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_SPIOL2.963e-1592.31NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_NYMAL2.963e-1592.31NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionEST0322 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB283 similar to NADH dehydrogenase subunit 4 (acc# AAO26143), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322198 ID=CB322198; Name=CB322198; organism=Citrus sinensis; type=EST; length=119bp
ACTTGTATGCTTCTAGCCGGAATCTTATTAAAAATGGGAGCATATGGGTT
GATTCGAATCAATATGGAACTATTACCGCACGCTCATTCTATATTTTCCC
CCTGGTTCATGATAGTAGG
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