CB322198

Overview
NameCB322198
Unique NameCB322198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length119
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_DIOEL (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Dioscorea elephantipes GN=ndhD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.622e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHS+FSPW +IV
Sbjct:  246 TCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLVIV 284          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_AMBTC (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Amborella trichopoda GN=ndhD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.126e-14
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHS+FSPW +IV
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLVIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_LEPVR (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Lepidium virginicum GN=ndhD PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.471e-14
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHS+FSPW ++V
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLLVV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_DRANE (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Draba nemorosa GN=ndhD PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.471e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHS+FSPW M V
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLMAV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_CARPA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Carica papaya GN=ndhD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.471e-14
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHS+FSPW ++V
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLVVV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_ARATH (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Arabidopsis thaliana GN=ndhD PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.471e-14
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHS+FSPW ++V
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLLVV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_MARPO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Marchantia polymorpha GN=ndhD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.276e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHS F+PW +IV
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSFFAPWLVIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_JASNU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Jasminum nudiflorum GN=ndhD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.276e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELL HAHS+FSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLSHAHSLFSPWLMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_HUPLU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Huperzia lucidula GN=ndhD PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.276e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMG YGLIRINMELLPHAHSIF+PW +IV
Sbjct:  247 TCMLLAGILLKMGGYGLIRINMELLPHAHSIFAPWLVIV 285          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_ACOCL (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Acorus calamus GN=ndhD PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.276e-14
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMI 114
            TCMLLAGILLKMGAYGL+RINMELLPHAHSIFSPW ++
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLVL 282          
The following BLAST results are available for this feature:
BLAST of CB322198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
NU4C_DIOEL8.622e-1592.31NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_AMBTC1.126e-1489.74NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_LEPVR1.471e-1487.18NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_DRANE1.471e-1489.74NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CARPA1.471e-1487.18NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_ARATH1.471e-1487.18NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_MARPO3.276e-1489.74NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_JASNU3.276e-1489.74NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_HUPLU3.276e-1489.74NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_ACOCL3.276e-1489.47NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionEST0322 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB283 similar to NADH dehydrogenase subunit 4 (acc# AAO26143), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322198 ID=CB322198; Name=CB322198; organism=Citrus sinensis; type=EST; length=119bp
ACTTGTATGCTTCTAGCCGGAATCTTATTAAAAATGGGAGCATATGGGTT
GATTCGAATCAATATGGAACTATTACCGCACGCTCATTCTATATTTTCCC
CCTGGTTCATGATAGTAGG
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