CB322198

Overview
NameCB322198
Unique NameCB322198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length119
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_ACOAM (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Acorus americanus GN=ndhD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.276e-14
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMI 114
            TCMLLAGILLKMGAYGL+RINMELLPHAHSIFSPW ++
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLVL 282          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_DAUCA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Daucus carota GN=ndhD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.279e-14
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELL HAHSIFSPW +IV
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLSHAHSIFSPWLVIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_CRYJA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cryptomeria japonica GN=ndhD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.279e-14
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAG+LLKMG YGLIRINMELLPHAHS+FSPW +I+
Sbjct:  245 TCMLLAGVLLKMGGYGLIRINMELLPHAHSLFSPWLIII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_COFAR (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Coffea arabica GN=ndhD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.279e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELL HAHSIFSPW +IV
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLSHAHSIFSPWLLIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_WHEAT (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Triticum aestivum GN=ndhD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.589e-14
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAH +FSPW +I+
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_ORYSJ (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhD PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.589e-14
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAH +FSPW +I+
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_ORYSI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oryza sativa subsp. indica GN=ndhD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.589e-14
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAH +FSPW +I+
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_ORYSA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oryza sativa GN=ndhD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.589e-14
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAH +FSPW +I+
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_ORYNI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oryza nivara GN=ndhD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.589e-14
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAH +FSPW +I+
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_LOLPR (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Lolium perenne GN=ndhD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.589e-14
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAH +FSPW +I+
Sbjct:  247 TCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVII 285          
The following BLAST results are available for this feature:
BLAST of CB322198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
NU4C_ACOAM3.276e-1489.47NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_DAUCA4.279e-1492.31NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CRYJA4.279e-1484.62NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_COFAR4.279e-1489.74NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_WHEAT5.589e-1487.18NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_ORYSJ5.589e-1487.18NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_ORYSI5.589e-1487.18NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_ORYSA5.589e-1487.18NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_ORYNI5.589e-1487.18NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_LOLPR5.589e-1487.18NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionEST0322 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB283 similar to NADH dehydrogenase subunit 4 (acc# AAO26143), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322198 ID=CB322198; Name=CB322198; organism=Citrus sinensis; type=EST; length=119bp
ACTTGTATGCTTCTAGCCGGAATCTTATTAAAAATGGGAGCATATGGGTT
GATTCGAATCAATATGGAACTATTACCGCACGCTCATTCTATATTTTCCC
CCTGGTTCATGATAGTAGG
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