CB322206

Overview
NameCB322206
Unique NameCB322206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5749 contig Csv1_Contig5749:93..394. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.698e-21
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+D DRWEF N+GF+R Q+HLL  I RRK    S    S QQS   +  C ++      +E++ LK  KN L  E++KLRQ
Sbjct:   86 FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRK--PPSNAPPSQQQS---LTSCLEVGEFGFEEEIDRLKRDKNILITEVVKLRQ 180          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.367e-20
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLR 299
            FKH+NFSSF+RQLN YGFRKID DRWEF NDGF+R Q+HLL  I RR+          L  S++ +  C ++    L +E++ LK  KN L  E++KLR
Sbjct:   81 FKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRR------PLSYLPGSQQALGTCLEVGQFGLDEEIDRLKRDKNILLAEVVKLR 173          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.332e-20
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+D D+WEF N+GF+R QKHLL +I RRK    S  ++SL           ++ H     E++ LK  K+ L  E++KLRQ
Sbjct:   82 FKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQSLGS-------FLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQ 174          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.784e-20
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+D DRWEF N+ F+R Q+HLL NI RRK         S QQS   + P  ++ H     E++ LK  K  L  E++KLRQ
Sbjct:   96 FKHNNFSSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRK---PPSHTASNQQS---LGPYLEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQ 189          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.860e-20
Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKN--TQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKHSNFSSFIRQLN YGFRKID DRWEF N+GF+  QKHLL NI RR+N   Q   Q+ S          C ++       EVE LK     L  E+++LRQ
Sbjct:   88 FKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMS-------CVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQ 182          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.511e-19
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRKIDTD+WEF N+ F+R +KHLL NI RR++ Q S Q      S+    P E      +  E+E L+  + AL +E+++L+Q
Sbjct:   99 FKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQ-SNQTCCSSTSQSQGSPTE------VGGEIEKLRKERRALMEEMVELQQ 191          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFA9_ORYSJ (Heat stress transcription factor A-9 OS=Oryza sativa subsp. japonica GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.578e-19
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNT---QGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLR 299
            FKHSNF+SFIRQLN YGFRK+  DRWE+ N+GF+  QKHLL  I RRK +     SE +K+  ++    E  E   +  L KEVE LK  K  L Q+L+ LR
Sbjct:   93 FKHSNFTSFIRQLNTYGFRKVHPDRWEWANEGFIMGQKHLLKTIKRRKKSSQESPSEIQKAPVKTAPGTENIEIGKYGGLEKEVETLKRDKALLMQQLVDLR 194          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFA5_ARATH (Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.279e-18
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSFIRQLN YGFRKID +RWEF+ND F++DQKHLL NI RRK         +    +         + + L ++++ L   K A+  +LLK +Q
Sbjct:   67 FKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHSHPPASSTDQ---------ERAVLQEQMDKLSREKAAIEAKLLKFKQ 157          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.671e-18
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+D DRWEF N+ F+R QKHLLNNI RRK+ +G                 + ++   + +E+E LK  +  L  E+ ++ +
Sbjct:   61 FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHARGMYG--------------QDLEDGEIVREIERLKEEQRELEAEIQRMNR 146          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA2A_ORYSJ (Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.349e-18
Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRK-----NTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKHSNFSSF+RQLN YGFRK+D DRWEF N+GF+R +K LL  I RR+         S    S Q  ++    C ++        V  L+  K+ L  E++KLRQ
Sbjct:   97 FKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKELLKTIKRRRPPPSSPPSSSSSSSSSQHQQQPAAACLEVGQFGRDGVVNRLQRDKSVLIAEVVKLRQ 201          
The following BLAST results are available for this feature:
BLAST of CB322206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HFA2C_ORYSJ4.698e-2152.00Heat stress transcription factor A-2c OS=Oryza sat... [more]
HFA2D_ORYSJ1.367e-2050.51Heat stress transcription factor A-2d OS=Oryza sat... [more]
HFA2E_ORYSJ2.332e-2049.00Heat stress transcription factor A-2e OS=Oryza sat... [more]
HFA2B_ORYSJ6.784e-2051.00Heat stress transcription factor A-2b OS=Oryza sat... [more]
HSFA2_ARATH8.860e-2051.96Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HSFA3_ARATH1.511e-1949.00Heat stress transcription factor A-3 OS=Arabidopsi... [more]
HSFA9_ORYSJ2.578e-1950.98Heat stress transcription factor A-9 OS=Oryza sati... [more]
HSFA5_ARATH1.279e-1846.00Heat stress transcription factor A-5 OS=Arabidopsi... [more]
HSFC1_ARATH1.671e-1844.00Heat stress transcription factor C-1 OS=Arabidopsi... [more]
HFA2A_ORYSJ6.349e-1844.76Heat stress transcription factor A-2a OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionEST0330 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB343 similar to putative heat shock transcription factor (acc# AAM19775), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322206 ID=CB322206; Name=CB322206; organism=Citrus sinensis; type=EST; length=302bp
ACTTCAAGCACAGTAACTTCTCCAGCTTCATCAGGCAACTCAATATCTAT
GGGTTTAGAAAAATTGACACAGACCGTTGGGAATTTGTAAATGATGGATT
CGTTAGAGATCAGAAGCATTTGTTGAACAATATTTGTAGAAGGAAAAATA
CTCAAGGGTCTGAGCAGCGAAAATCATTGCAGCAGTCAGAAAAGTTGGTT
GAACCATGTGAGAAAATTGACCATTCGGCACTGTGGAAGGAAGTTGAGAA
TTTGAAGGCTGGTAAAAATGCACTTACACAGGAGTTGCTGAAACTTAGGC
AG
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