CB322206

Overview
NameCB322206
Unique NameCB322206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFA9_ARATH (Heat stress transcription factor A-9 OS=Arabidopsis thaliana GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.293e-18
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRR-KNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH NFSSFIRQLN YGF+K+D+DRWEF N+GF   +KHLL NI RR KNT+   +  S   +E                EVE+LK  ++ +  E+LKL+Q
Sbjct:  115 FKHKNFSSFIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRSKNTKCCNKEASTTTTE---------------TEVESLKEEQSPMRLEMLKLKQ 200          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.169e-17
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+  DRWEF ++ F+R  KHLL  I RR+++    Q+  LQ              S L  E+  L+  K+AL QE+ +L+Q
Sbjct:  111 FKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRRSS--PTQQSGLQPGSS--------GESGLDPELNTLRREKSALLQEVTRLKQ 200          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQG-SEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKHSNFSSFIRQLN YGFRKID +RWEF N+ F++ QKHLL NI RRK     S    +L  +E+ +             E+E L   K+ L  +L K +Q
Sbjct:   66 FKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPIHSHSHPPGALPDNERAI----------FEDEIERLSREKSNLQADLWKSKQ 156          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA6A_ARATH (Heat stress transcription factor A-6a OS=Arabidopsis thaliana GN=HSFA6A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGF+KIDT+RWEF N+ F++ ++HLL NI RRK T    Q +SL+                   E+  L+  + AL  EL++LR+
Sbjct:   63 FKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRK-TSSQTQTQSLE------------------GEIHELRRDRMALEVELVRLRR 143          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSFIRQLN YGFRKID +RWEF N+ F+R   HLL NI RRK         SLQ   ++  P  + +   L +E+  LK  K+ L  +L +  Q
Sbjct:   64 FKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHS----HSLQ--NQINGPLAESERRELEEEINRLKYEKSILVADLQRQNQ 157          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLK 293
            FKH+NFSSFIRQLN YGFRK D ++WEF ND FVR Q HL+ NI RRK         SL   +  + P    +   +  ++E L   K  L +EL K
Sbjct:   59 FKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHS----HSLPNLQAQLNPLTDSERVRMNNQIERLTKEKEGLLEELHK 151          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.668e-16
Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH NFSSFIRQLN YGFRK+D ++WEF+ND FVR + +L+ NI RRK    S    +LQ    L E     +  ++  ++E LK  K  L  EL    Q
Sbjct:   57 FKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVH-SHSLVNLQAQNPLTES----ERRSMEDQIERLKNEKEGLLAELQNQEQ 151          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA6B_ORYSJ (Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+  DRWEF N+ F+  QKHLL NI RR+ +      K L  S+   +            EV +LK  + AL  E++ L+Q
Sbjct:  139 FKHANFSSFVRQLNTYGFRKVTPDRWEFANEAFLAGQKHLLKNIKRRRVS------KPLVDSQLRNKASVVFGQPEAPGEVVSLKRDRAALRAEVIMLKQ 232          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQEL 287
            FKH+NFSSF+RQLN YGFRK+D ++WEF N+ F++ Q+H L NI RRK         S  Q    +   E+ D+    +E+E LK+   AL+ EL
Sbjct:   56 FKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPI---FSHSSHSQGAGPLTDNERKDYE---EEIERLKSDNAALSSEL 144          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA6A_ORYSJ (Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.258e-15
Identity = 44/100 (44.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+  DRWEF N+ F+  Q+HLL NI RR+   G         +                 EVE L+  K AL +EL +LR+
Sbjct:   88 FKHANFSSFLRQLNTYGFRKVSADRWEFANEDFLGGQRHLLANIRRRRRGAG---------TGSTTPRAVNCGGGGGEGEVERLRRDKEALARELARLRR 178          
The following BLAST results are available for this feature:
BLAST of CB322206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HSFA9_ARATH8.293e-1848.51Heat stress transcription factor A-9 OS=Arabidopsi... [more]
HSFA3_ORYSJ9.169e-1745.00Heat stress transcription factor A-3 OS=Oryza sati... [more]
HSFA5_ORYSJ1.197e-1647.52Heat stress transcription factor A-5 OS=Oryza sati... [more]
HFA6A_ARATH1.197e-1645.00Heat stress transcription factor A-6a OS=Arabidops... [more]
HFA4D_ORYSJ1.197e-1647.00Heat stress transcription factor A-4d OS=Oryza sat... [more]
HFA4A_ARATH1.197e-1646.39Heat stress transcription factor A-4a OS=Arabidops... [more]
HFA4C_ARATH2.668e-1646.00Heat stress transcription factor A-4c OS=Arabidops... [more]
HFA6B_ORYSJ1.729e-1545.00Heat stress transcription factor A-6a OS=Oryza sat... [more]
HFA4B_ORYSJ1.729e-1545.26Heat stress transcription factor A-4b OS=Oryza sat... [more]
HFA6A_ORYSJ2.258e-1544.00Putative heat stress transcription factor A-6a OS=... [more]

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Properties
Property NameValue
Genbank descriptionEST0330 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB343 similar to putative heat shock transcription factor (acc# AAM19775), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322206 ID=CB322206; Name=CB322206; organism=Citrus sinensis; type=EST; length=302bp
ACTTCAAGCACAGTAACTTCTCCAGCTTCATCAGGCAACTCAATATCTAT
GGGTTTAGAAAAATTGACACAGACCGTTGGGAATTTGTAAATGATGGATT
CGTTAGAGATCAGAAGCATTTGTTGAACAATATTTGTAGAAGGAAAAATA
CTCAAGGGTCTGAGCAGCGAAAATCATTGCAGCAGTCAGAAAAGTTGGTT
GAACCATGTGAGAAAATTGACCATTCGGCACTGTGGAAGGAAGTTGAGAA
TTTGAAGGCTGGTAAAAATGCACTTACACAGGAGTTGCTGAAACTTAGGC
AG
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