CB322206

Overview
NameCB322206
Unique NameCB322206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFC2A_ORYSJ (Heat stress transcription factor C-2a OS=Oryza sativa subsp. japonica GN=HSFC2A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRK 173
            FKHSNFSSF+RQLN YGFRK+D DRWEF +  F+R Q HLL  I RR +  G  +RK
Sbjct:   58 FKHSNFSSFVRQLNTYGFRKVDPDRWEFAHVSFLRGQTHLLRRIVRRSSGGGGAKRK 114          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRKI+ +RWEF+N+GF+  Q+ LL +I RR ++         Q   +  +P           E+  L+  ++ L  E+  LRQ
Sbjct:   72 FKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLNYSQSQPEAHDP---------GVELPQLREERHVLMMEISTLRQ 162          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKS 176
            FKH+NFSSF+RQLN YGFRKI  DRWEF N+ F R +KHLL  I RRK +Q   Q+ S
Sbjct:   78 FKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTSQMIPQQHS 135          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFC1A_ORYSJ (Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNT---------------------QGSEQRKSLQQSEKLVEPCEKI--DHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH NFSSF+RQLN YGFRK+  DRWEF ++ F+R Q HLL  I RRK                       Q +    S+  S +  +  E +    +AL++EV+ L+  + A+ +EL ++ Q
Sbjct:   70 FKHGNFSSFVRQLNTYGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRKKRGEGGGGGGGASCSFGGGAGEHQVAAAAASVGMSGEEEDAAEDVLAKEAALFEEVQRLRHEQTAIGEELARMSQ 192          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.259e-14
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRR 143
            FKH+NFSSF+RQLN YGFRK+D DRWEF +  F+R Q HLL NI RR
Sbjct:   55 FKHNNFSSFVRQLNTYGFRKVDPDRWEFAHASFLRGQTHLLRNIVRR 101          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNT 152
            FKHSNFSSF+RQLN YGF+K+  DRWEF ND F R +KHLL  I RRK +
Sbjct:   54 FKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGS 103          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSE 164
            FKH+NFSSF+RQLN YGFRKI  DRWEF N+ F +  KHLL+ I RRK++  S+
Sbjct:   80 FKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSSSCSQ 133          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.114e-13
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQ 155
            FKH+NFSSF+RQLN YGFRKI  DRWEF N+ F +  KHLL  I RRK++Q
Sbjct:   78 FKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRKSSQ 128          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQ--RKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQEL 287
            FKH NF+SF+RQLN YGFRK+D DRWEF ++ F+R Q  LL  I R+K   G+    R+  ++ E++    E +    L +E   ++    A+ Q L
Sbjct:   68 FKHRNFASFVRQLNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKKKKGGAAPGCRELCEEGEEVRGTIEAVQR--LREEQRGMEEELQAMDQRL 162          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA7A_ARATH (Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 43/100 (43.00%), Postives = 51/100 (51.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKHSNFSSFIRQLN YGFRKI+ +RWEF N+ F+  Q+ LL NI RR                    P     H A       L+  K  L  E++ LRQ
Sbjct:   73 FKHSNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNP----------------FTPSSSPSHDA----CNELRREKQVLMMEIVSLRQ 152          
The following BLAST results are available for this feature:
BLAST of CB322206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HFC2A_ORYSJ3.852e-1563.16Heat stress transcription factor C-2a OS=Oryza sat... [more]
HFA7B_ARATH2.497e-1440.00Heat stress transcription factor A-7b OS=Arabidops... [more]
HSFB4_ARATH3.261e-1463.79Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFC1A_ORYSJ3.261e-1436.59Heat stress transcription factor C-1a OS=Oryza sat... [more]
HFC2B_ORYSJ4.259e-1470.21Heat stress transcription factor C-2b OS=Oryza sat... [more]
HFB2A_ORYSJ5.562e-1468.00Heat stress transcription factor B-2a OS=Oryza sat... [more]
HFB4D_ORYSJ1.618e-1362.96Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFB4B_ORYSJ2.114e-1366.67Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFC1B_ORYSJ3.605e-1340.21Heat stress transcription factor C-1b OS=Oryza sat... [more]
HFA7A_ARATH3.605e-1343.00Heat stress transcription factor A-7a OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionEST0330 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB343 similar to putative heat shock transcription factor (acc# AAM19775), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322206 ID=CB322206; Name=CB322206; organism=Citrus sinensis; type=EST; length=302bp
ACTTCAAGCACAGTAACTTCTCCAGCTTCATCAGGCAACTCAATATCTAT
GGGTTTAGAAAAATTGACACAGACCGTTGGGAATTTGTAAATGATGGATT
CGTTAGAGATCAGAAGCATTTGTTGAACAATATTTGTAGAAGGAAAAATA
CTCAAGGGTCTGAGCAGCGAAAATCATTGCAGCAGTCAGAAAAGTTGGTT
GAACCATGTGAGAAAATTGACCATTCGGCACTGTGGAAGGAAGTTGAGAA
TTTGAAGGCTGGTAAAAATGCACTTACACAGGAGTTGCTGAAACTTAGGC
AG
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