CB322206

Overview
NameCB322206
Unique NameCB322206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.032e-13
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQ 182
            FKH NFSSF+RQLN YGFRK+ T RWEF N+ F + Q+ L++NI RRK+   S  + + Q
Sbjct:   84 FKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQHWSHNKSNHQ 143          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.032e-13
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQ 155
            FKH+NFSSF+RQLN YGFRK+  DRWEF ND F R +K LL +I RRK +Q
Sbjct:  103 FKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQ 153          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.049e-12
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRK 146
            FKH+NFSSF+RQLN YGFRKI  D+WEF N+ F R QK LL  I RRK
Sbjct:   53 FKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRK 100          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.049e-12
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRK 146
            FKH+NFSSF+RQLN YGFRKI  DRWEF ND F R +K LL +I RRK
Sbjct:   82 FKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRK 129          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.370e-12
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNT 152
            FKH+NFSSF+RQLN YGF+K+  DRWEF ND F R +K LL  I RRK T
Sbjct:   67 FKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKIT 116          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNT 152
            FKH+NFSSF+RQLN YGFRKI  DRWEF ND F R ++ LL  I RRK T
Sbjct:   92 FKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRKVT 141          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGS 161
            FKH+NFSSF+RQLN YGFRK+  +RWEF N+ F + +K LL  I RRK +  S
Sbjct:   69 FKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRKTSSAS 121          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.800e-12
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNT 152
            FKH NFSSF+RQLN YGFRK+  DRWEF N  F R ++ LL+ I RRK T
Sbjct:   74 FKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRKAT 123          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKN 149
            FKHSNFSSF+RQLN YGFRK+  +RWEF N+ F + +K LL  I RRK+
Sbjct:   74 FKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRKS 122          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRK 173
            FKH+NFSSFIRQLN YGFRK   D+WEF ND F R  + LL +I RRK+   S   K
Sbjct:   58 FKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIASTAGK 114          
The following BLAST results are available for this feature:
BLAST of CB322206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HSFB3_ARATH8.032e-1355.00Heat stress transcription factor B-3 OS=Arabidopsi... [more]
HFB2B_ARATH8.032e-1366.67Heat stress transcription factor B-2b OS=Arabidops... [more]
HSF24_SOLPE1.049e-1268.75Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HFB2C_ORYSJ1.049e-1270.83Heat stress transcription factor B-2c OS=Oryza sat... [more]
HFB2A_ARATH1.370e-1266.00Heat stress transcription factor B-2a OS=Arabidops... [more]
HFB2B_ORYSJ1.789e-1268.00Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB4C_ORYSJ3.986e-1258.49Heat stress transcription factor B-4c OS=Oryza sat... [more]
HSFB1_ORYSJ6.800e-1264.00Heat stress transcription factor B-1 OS=Oryza sati... [more]
HFB4A_ORYSJ1.160e-1163.27Putative heat stress transcription factor B-4a OS=... [more]
HSFB1_ARATH1.515e-1159.65Heat stress transcription factor B-1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionEST0330 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB343 similar to putative heat shock transcription factor (acc# AAM19775), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322206 ID=CB322206; Name=CB322206; organism=Citrus sinensis; type=EST; length=302bp
ACTTCAAGCACAGTAACTTCTCCAGCTTCATCAGGCAACTCAATATCTAT
GGGTTTAGAAAAATTGACACAGACCGTTGGGAATTTGTAAATGATGGATT
CGTTAGAGATCAGAAGCATTTGTTGAACAATATTTGTAGAAGGAAAAATA
CTCAAGGGTCTGAGCAGCGAAAATCATTGCAGCAGTCAGAAAAGTTGGTT
GAACCATGTGAGAAAATTGACCATTCGGCACTGTGGAAGGAAGTTGAGAA
TTTGAAGGCTGGTAAAAATGCACTTACACAGGAGTTGCTGAAACTTAGGC
AG
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