CB322217

Overview
NameCB322217
Unique NameCB322217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.579e-14
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW +PV+W LYGL+T Q GDL+  + + DG  T   V  F+ D++ F+ DF+ VV+ M   +  +F  VFA AIK +NFQRR
Sbjct: 1370 YWANPVSWTLYGLLTSQFGDLDQPLLLADGITTTTAV-DFLRDHFGFRHDFLGVVAGMVAGFCVLFAVVFALAIKYLNFQRR 1450          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.579e-14
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YWL PVAW LYGL+  Q GD+     + D N   M+VKQFI + Y +++ F+ VV+ M++++  +F  +FA  IK+ NFQ+R
Sbjct: 1347 YWLCPVAWTLYGLIASQFGDITE--PMADSN---MSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.243e-13
Identity = 30/82 (36.59%), Postives = 53/82 (64.63%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YWL P+AW +YGL+  Q GDLE ++ +P  +N   T+  ++  ++ + + F+PVV+ + +++   F F++A  IK +NFQ R
Sbjct: 1421 YWLCPLAWTVYGLIVTQYGDLEQIISVPGQSN--QTISYYVTHHFGYHRKFMPVVAPVLVLFAVFFAFMYAICIKKLNFQHR 1500          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.623e-13
Identity = 31/82 (37.80%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW+ PVAW +YGL+  Q GD+E  +++P G     T+K +IE++Y +  DF+  ++ + + +   F F+FA+ I+ +NFQ+R
Sbjct: 1336 YWICPVAWTVYGLIVSQYGDVEDTIKVP-GMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.120e-13
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW  PVAW LYGLV  Q G+    +   D      TVK F+     F+ DF+PVV +M +V+  +F  +FA++IK +NFQRR
Sbjct: 1365 YWACPVAWTLYGLVVSQFGEYTDTMSDVDE-----TVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.616e-13
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YWL PVAW +YGL+  Q GD+E  + +P    +   V+ FI+D + +  DF+ VV+ +   +   F F +AY+I+ +NFQ+R
Sbjct: 1430 YWLCPVAWTVYGLIVSQYGDVEDFITVP--GQSDQQVRPFIKDYFGYDPDFMGVVAAVLAGFTVFFAFTYAYSIRTLNFQQR 1509          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.222e-12
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 3
Query:    6 WLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            W+ PVAW LYGLV  Q GD+  +  + DG      VK F+E+ +DFK  ++ VV+++ + +  +F F+F +AI  +NFQ+R
Sbjct: 1390 WICPVAWTLYGLVASQFGDI--MTPMDDGT----PVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.541e-11
Identity = 30/81 (37.04%), Postives = 51/81 (62.96%), Query Frame = 3
Query:    6 WLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            W+ PVAW LYGL+  Q GD+  +  + DG    + V  F+E+ +DFK  ++  V+++ + +  +F F+F +AI  +NFQ+R
Sbjct: 1394 WICPVAWTLYGLIVSQYGDI--VTPMDDG----IPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468          
The following BLAST results are available for this feature:
BLAST of CB322217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PDR6_ORYSJ5.579e-1446.34Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]
AB40G_ARATH5.579e-1443.90ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR12_ORYSJ1.243e-1336.59Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
AB29G_ARATH1.623e-1337.80ABC transporter G family member 29 OS=Arabidopsis ... [more]
TUR2_SPIPO2.120e-1343.90Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR15_ORYSJ3.616e-1339.02Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
PDR2_ORYSJ5.222e-1240.74Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR1_ORYSJ7.541e-1137.04Probable pleiotropic drug resistance protein 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionEST0342 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB358 similar to ABC transporter (acc# AAM15320), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322217 ID=CB322217; Name=CB322217; organism=Citrus sinensis; type=EST; length=329bp
ACTACTGGCTTTCTCCGGTGGCTTGGAATCTGTATGGCCTTGTTACTTGT
CAAGTTGGTGACTTAGAGTCACTTGTGGAGATTCCTGATGGTAATAATAC
TAAAATGACAGTGAAGCAATTCATCGAAGATAATTATGATTTCAAGAAAG
ATTTCATTCCTGTCGTTAGTATCATGCACATTGTCTGGATGGCCGTGTTC
TTGTTTGTGTTTGCCTATGCCATCAAGGCCATCAACTTCCAAAGGAGATA
AACCAGCTCAAATCTTAAGAATGATAGACCTAAGTGAGCATGTGGGAAAC
AAAAGGTTACCACATTTTTTTTTCTTTTG
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