CB417293

Overview
NameCB417293
Unique NameCB417293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10200 contig Csv1_Contig10200:812..1373. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUS2_PEA (Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.263e-73
Identity = 131/184 (71.20%), Postives = 153/184 (83.15%), Query Frame = 2
Query:    2 PETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQ 553
            P+T +SE     Q  G ERGWGDTA R LEM+       +APDP TLETFLGR+PMVFNVVIL+PHG+F Q +VLG PDTGGQVVYILDQVRALE EML+RIK+QGLD TP+ILI+TRL+PDA GTTC QRLE+V GT+Y+ ILRVPFR+EKG++RKWISRF+VWP+LET+ EDVA EIA ELQ
Sbjct:  223 PDTLYSEFEYELQGTGFERGWGDTAARVLEMMHLLLDILQAPDPSTLETFLGRVPMVFNVVILSPHGFFGQANVLGLPDTGGQVVYILDQVRALESEMLVRIKKQGLDFTPRILIVTRLIPDAKGTTCNQRLERVSGTEYTHILRVPFRSEKGILRKWISRFDVWPFLETFAEDVASEIAAELQ 406          
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUSY_BETVU (Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS1 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 7.281e-72
Identity = 128/183 (69.95%), Postives = 152/183 (83.06%), Query Frame = 2
Query:    5 ETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQ 553
            +TP+SE     Q +G ERGWGDTAER LEM+       +APDP TLETFLGR+PMVFNVVIL+ HGYF Q  VLG PDTGGQ+VYILDQVR+LE EML RIK+QGLD+TP+ILI++RL+PDA GTTC QR+EKV GT+++ ILRVPFR+EKG++RKWISRF+VWPYLET+TED A EI  ELQ
Sbjct:  166 DTPYSEFEFVIQGMGFERGWGDTAERVLEMMHLLLDILQAPDPSTLETFLGRLPMVFNVVILSVHGYFGQAHVLGLPDTGGQIVYILDQVRSLEHEMLQRIKKQGLDVTPRILIVSRLIPDAKGTTCNQRMEKVSGTEHASILRVPFRSEKGILRKWISRFDVWPYLETFTEDAAGEIIGELQ 348          
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUS2_ARATH (Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g49190 PE=2 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 2.767e-71
Identity = 125/182 (68.68%), Postives = 152/182 (83.52%), Query Frame = 2
Query:    8 TPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQ 553
            TP+SE     Q +G ERGWGDTA++  EM+       +APDP  LETFLGRIPMVFNVVIL+PHGYF Q +VLG PDTGGQVVYILDQVRALE+EMLLRI++QGL++ P+ILI+TRLLP+A GTTC QRLE+V GT+++ ILR+PFRTEKG++RKWISRF+VWPYLET+ ED + EI+ ELQ
Sbjct:  219 TPYSEFEFELQGMGFERGWGDTAQKVSEMVHLLLDILQAPDPSVLETFLGRIPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIQKQGLEVIPKILIVTRLLPEAKGTTCNQRLERVSGTEHAHILRIPFRTEKGILRKWISRFDVWPYLETFAEDASNEISAELQ 400          
The following BLAST results are available for this feature:
BLAST of CB417293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUS2_PEA2.263e-7371.20Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 S... [more]
SUSY_BETVU7.281e-7269.95Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS... [more]
SUS2_ARATH2.767e-7168.68Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g... [more]

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Properties
Property NameValue
Genbank descriptionEST0366 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P009 similar to sucrose synthase (acc# BAA89049), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417293 ID=CB417293; Name=CB417293; organism=Citrus sinensis; type=EST; length=562bp
ACCAGAAACGCCATTCTCTGAGTTGGCACTAAGATTTCAGGAGATTGGTT
TGGAGAGAGGTTGGGGTGATACTGCTGAGCGCGCACTTGAGATGATTCAG
CTTCTTTTGGATCTTCTTGAGGCACCTGATCCGTGCACTCTTGAGACTTT
CCTTGGCAGAATCCCCATGGTCTTTAATGTTGTGATCCTTACTCCCCACG
GTTACTTTGCCCAAGACGATGTTTTGGGCTACCCTGATACTGGTGGTCAG
GTTGTTTACATCTTGGATCAAGTTCGTGCCTTGGAGGATGAGATGCTTCT
TCGTATCAAGCAGCAAGGACTTGATATCACCCCTCAAATCCTCATTATTA
CCCGTCTCCTCCCAGATGCAGTAGGCACAACATGTGGTCAGCGACTTGAG
AAAGTTTATGGAACTAAGTATTCAGATATACTTCGAGTTCCCTTTAGAAC
TGAGAAGGGAGTTGTCCGCAAGTGGATCTCACGATTTGAAGTCTGGCCTT
ATCTAGAGACCTACACCGAGGATGTTGCTGTTGAAATTGCCAAAGAGTTG
CAGGCAAGCCTG
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