CB417297

Overview
NameCB417297
Unique NameCB417297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:800..1391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 8.860e-49
Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTY 588
            DA + KS + ++VLVGGSTRIPKVQQLL+DFF GKE  K +NPDE           ILSGEG ++ +D             ET GGVMT LIPRNT IPTKK QVF+TY
Sbjct:  354 DAGLQKSQIDEIVLVGGSTRIPKVQQLLKDFFEGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTY 462          

HSP 2 Score: 95.9005 bits (237), Expect = 8.860e-49
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++ +F++  K+K++KDIS + +AL +LR  CERAKR LSS  Q  +EI+SL++G+D    +TRARFEELN DLFRK M PV+K
Sbjct:  267 RIMEYFIKLIKKKHQKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGVDLSEPLTRARFEELNNDLFRKTMGPVKK 350          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.505e-48
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTY 588
            DA ++KS +H++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D             ET GGVMT LIPRNT IPTKK QVF+TY
Sbjct:  352 DAGLEKSQIHEIVLVGGSTRIPKVQQLLRDYFDGKEPNKGVNPDEAVAFGAAVQGSILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTY 460          

HSP 2 Score: 91.6633 bits (226), Expect = 1.505e-48
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++ +F++  K+K  KDIS + RAL +LR   ERAKR LS+  Q  +EI+SL++G DF   +TRARFEELN DLFRK M PV+K
Sbjct:  265 RIMEYFIKLIKKKYSKDISKDNRALGKLRREAERAKRALSNQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKK 348          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.343e-48
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTY 588
            DA ++K+ + ++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D             ET GGVMT LIPRNT IPTKK QVF+TY
Sbjct:  355 DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTY 463          

HSP 2 Score: 94.7449 bits (234), Expect = 4.343e-48
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++ +F++  K+K+ KDIS + RAL +LR   ERAKR LSS  Q  +EI+SL++G+DF   +TRARFEELN DLFRK M PV+K
Sbjct:  268 RIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKK 351          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.343e-48
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTY 588
            DA ++K+ + ++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D             ET GGVMT LIPRNT IPTKK QVF+TY
Sbjct:  356 DAGLEKTQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTY 464          

HSP 2 Score: 94.7449 bits (234), Expect = 4.343e-48
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++ +F++  K+K+ KDIS + RAL +LR   ERAKR LSS  Q  +EI+SL++G+DF   +TRARFEELN DLFRK M PV+K
Sbjct:  269 RIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKK 352          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP75_ZYGRC (Heat shock protein SSB OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=SSB PE=3 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.384e-48
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            M+ HF  EFK+K   DISG+ RALRRLRTACERAKRTLSS  QTTIE+DSLY G DF T+ITRARFE+LN  LF+  +EPVE+
Sbjct:  240 MLEHFKNEFKKKTGNDISGDARALRRLRTACERAKRTLSSVTQTTIEVDSLYNGDDFETSITRARFEDLNSSLFKSTLEPVEQ 322          

HSP 2 Score: 92.8189 bits (229), Expect = 7.384e-48
Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEG-NEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DAK+ K+ + +VVLVGGSTRIPKVQ++L DFF GK+L KSINPDE           IL+G+  +E  +D                G +  +++PRNTT+PT K + F+T
Sbjct:  325 KDAKVPKTEIDEVVLVGGSTRIPKVQKMLSDFFEGKQLEKSINPDEAVAYGAAVQGAILTGQSTSEDTKDLLLLDVAPLSLGVGMQGDIFGIVVPRNTTVPTIKRRTFTT 434          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.775e-47
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTY 588
            DA + K+ + ++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D             ET GGVMT  IPRNT IPTKK QVF+TY
Sbjct:  355 DAGLQKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPSKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKFIPRNTVIPTKKSQVFTTY 463          

HSP 2 Score: 93.5893 bits (231), Expect = 2.775e-47
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++ +F++  K+K+ KDIS + RAL +LR   ERAKR+LSS  Q  +EI+SL++G DF   +TRARFEELN DLFRK M PV+K
Sbjct:  268 RIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRSLSSQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKK 351          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP75_KLUMA (Heat shock protein SSB OS=Kluyveromyces marxianus GN=SSB PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.777e-47
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++ HF  EFK+K   DISG+ RALRRLRTA ERAKRTLSS AQTT+E+DSL++G DF  TITRARFE++N  LF+  +EPVE+
Sbjct:  240 LLEHFKTEFKKKTGADISGDARALRRLRTAAERAKRTLSSVAQTTVEVDSLFDGEDFEATITRARFEDINAALFKSTLEPVEQ 322          

HSP 2 Score: 97.8265 bits (242), Expect = 2.777e-47
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEG-NEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DAK+ KS + +VVLVGGSTRIPKVQ+LL DFF+GK+L KSINPDE           IL+G+  +++ +D               AG V  V++PRNTT+PT K + F+T
Sbjct:  325 KDAKISKSQIDEVVLVGGSTRIPKVQKLLSDFFDGKQLEKSINPDEAVAYGAAVQGAILTGQSTSDETKDLLLLDVAPLSLGVGMAGDVFGVVVPRNTTVPTIKRRTFTT 434          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP75_KLULA (Heat shock protein SSB OS=Kluyveromyces lactis GN=SSB PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 8.011e-47
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++ HF  EFK+K   DISG+ RALRRLRTA ERAKRTLSS AQTT+E+DSL++G DF  TITRARFE++N  LF+  +EPVE+
Sbjct:  240 LLEHFKTEFKKKTGLDISGDARALRRLRTAAERAKRTLSSVAQTTVEVDSLFDGEDFEATITRARFEDINAALFKSTLEPVEQ 322          

HSP 2 Score: 96.6709 bits (239), Expect = 8.011e-47
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEG-NEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DAK+ KS + +VVLVGGSTRIPKVQ+LL DFF GK+L KSINPDE           IL+G+  +++ +D               AG V  V++PRNTT+PT K + F+T
Sbjct:  325 KDAKIAKSQIDEVVLVGGSTRIPKVQKLLSDFFEGKQLEKSINPDEAVAYGAAVQGAILTGQSTSDETKDLLLLDVAPLSLGVGMAGDVFGVVVPRNTTVPTIKRRTFTT 434          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP75_SCHPO (Heat shock protein sks2 OS=Schizosaccharomyces pombe GN=sks2 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.311e-46
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            +V HF+QEFKRK K DIS +PRALRRLR+ACERAKR LSS  QTT+E+DSL  GIDF ++ITRARFE++N   F+  ++PV K
Sbjct:  239 LVEHFIQEFKRKQKIDISDDPRALRRLRSACERAKRALSSVTQTTVEVDSLSNGIDFSSSITRARFEDINATTFKATIDPVAK 321          

HSP 2 Score: 92.8189 bits (229), Expect = 2.311e-46
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEG-NEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +D+K+ K+ VHD+VLVGGSTRIPKVQ+L+ DFF+G+ L KSINPDE           +L+ +  ++K QD                G V  V+ PRNT IPT K++ F+T
Sbjct:  324 KDSKVPKADVHDIVLVGGSTRIPKVQRLVSDFFDGRALNKSINPDEAVAYGAAVQAAVLTNKADSDKTQDLLLLDVVPLSLGVAMEGNVFGVVCPRNTPIPTIKKRTFTT 433          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HS7C4_DICDI (Heat shock cognate 70 kDa protein 4 OS=Dictyostelium discoideum GN=DDB_G0293678 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.928e-46
Identity = 54/83 (65.06%), Postives = 68/83 (81.93%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVE 251
            R++NHF+ EFK K+KKDI+ N RA+ RLRTACERAKRTLS ++  +IEIDSLY+GIDFY+TITR  FE+L  DLF  C++ VE
Sbjct:  236 RLMNHFIDEFKLKHKKDITNNQRAIFRLRTACERAKRTLSISSLASIEIDSLYDGIDFYSTITRTHFEKLCSDLFHSCIDHVE 318          

HSP 2 Score: 91.6633 bits (226), Expect = 3.928e-46
Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  268 KMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            K+DKS V ++VL GGST+IPK+Q++ +++FNGKE   SINPDE           ++SG+G+   Q              ET GG+MT L+ RNT IP KK Q FST
Sbjct:  325 KLDKSLVDEIVLAGGSTQIPKIQRMFKEYFNGKEFNNSINPDEVVAYGAAVQSGVISGKGSNFPQ-LIFLNVTPLSMGIETVGGIMTNLVERNTHIPIKKTQTFST 429          
The following BLAST results are available for this feature:
BLAST of CB417297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIP2_ARATH8.860e-4955.96Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP2_MAIZE1.505e-4855.96Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
BIP5_TOBAC4.343e-4854.13Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
BIP4_TOBAC4.343e-4854.13Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
HSP75_ZYGRC7.384e-4869.88Heat shock protein SSB OS=Zygosaccharomyces rouxii... [more]
BIP_SOLLC2.775e-4753.21Luminal-binding protein OS=Solanum lycopersicum PE... [more]
HSP75_KLUMA2.777e-4765.06Heat shock protein SSB OS=Kluyveromyces marxianus ... [more]
HSP75_KLULA8.011e-4765.06Heat shock protein SSB OS=Kluyveromyces lactis GN=... [more]
HSP75_SCHPO2.311e-4665.06Heat shock protein sks2 OS=Schizosaccharomyces pom... [more]
HS7C4_DICDI3.928e-4665.06Heat shock cognate 70 kDa protein 4 OS=Dictyosteli... [more]

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Properties
Property NameValue
Genbank descriptionEST0370 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P015 similar to 70 kDa heat shock protein (acc# AAL24367), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417297 ID=CB417297; Name=CB417297; organism=Citrus sinensis; type=EST; length=590bp
ACAGAATGGTGAACCACTTTGTTCAAGAGTTCAAGAGGAAAAACAAGAAG
GATATTAGTGGAAACCCCAGAGCGTTGAGGAGGTTGAGAACTGCCTGTGA
AAGGGCTAAGAGGACCCTGTCATCAACCGCACAGACTACAATTGAGATTG
ATTCTTTATATGAGGGTATTGATTTCTACACAACCATTACAAGGGCTAGA
TTCGAAGAGTTGAACATGGATTTGTTCAGGAAGTGTATGGAGCCAGTGGA
GAAATGCGAGAGATGCTAAGATGGACAAGAGCAGTGTCCATGATGTGGTT
CTTGTTGGTGGGTCTACTAGGATCCCAAAAGTCCAGCAACTGTTGCAGGA
CTTCTTCAATGGAAAAGAGCTATGCAAGAGCATCAACCCTGATGAAGCGG
TTGCCTACGGTGCTGCTGTGCAGGCTGCAATCTTGAGTGGTGAGGGTAAT
GAGAAGGTTCAGGACCTCTTATTGCTTGACGTCACCCCTCTATCGCTGGG
TTTGGAGACTGCTGGTGGAGTCATGACTGTGTTGATTCCAAGGAACACCA
CTATTCCAACCAAGAAGGAGCAGGTGTTCTCCACATACTC
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