CB417297

Overview
NameCB417297
Unique NameCB417297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.682e-46
Identity = 57/108 (52.78%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DAKM    + DVV VGGSTRIPKVQ+L+++FFNGK++ K INPDE           +LSGE  E V+D             ET+GGVMT LI RNT IPT+K Q+FST
Sbjct:  358 DAKMKPDEIDDVVFVGGSTRIPKVQELIENFFNGKKISKGINPDEAVAFGAAVQGGVLSGE--EGVEDIVLIDVNPLTLGIETSGGVMTTLIKRNTPIPTQKSQIFST 463          

HSP 2 Score: 97.0561 bits (240), Expect = 8.682e-46
Identity = 46/84 (54.76%), Postives = 65/84 (77.38%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R+V HF++ FK+K+  DIS N +AL +L+   E+AKRTLSS   T IEIDS  +GIDF  +++RA+FEELNMDLF+K ++PV++
Sbjct:  271 RVVRHFIKVFKKKHGIDISDNSKALAKLKREVEKAKRTLSSQMSTRIEIDSFVDGIDFSESLSRAKFEELNMDLFKKTLKPVQQ 354          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP75_CANAL (Heat shock protein SSB1 OS=Candida albicans GN=SSB1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.476e-45
Identity = 51/83 (61.45%), Postives = 66/83 (79.52%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++ HF +EF++K   DIS + RALRRLRTACERAKR+LSS  QTT+EIDSL++G DF   ITRARFE++N  LF+  +EPVE+
Sbjct:  240 LLEHFKKEFQKKTGNDISSDARALRRLRTACERAKRSLSSGTQTTVEIDSLFDGEDFSANITRARFEDINSALFKSTLEPVEQ 322          

HSP 2 Score: 96.6709 bits (239), Expect = 1.476e-45
Identity = 52/109 (47.71%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEG-NEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DAK+ KS V +VVLVGGSTRIPKVQ+LL DFF+GK+L KSINPDE           IL+G+  N+  +D                G V+  ++PRNTT+PT K + F+T
Sbjct:  326 DAKISKSQVDEVVLVGGSTRIPKVQKLLSDFFDGKQLEKSINPDEAVAYGAAVQGAILTGQSTNDDTKDLLLLDVIPLSLGVAMQGNVLAPVVPRNTTVPTIKRRTFTT 434          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP75_ASHGO (Heat shock protein SSB OS=Ashbya gossypii GN=SSB PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.923e-45
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++ HF  EFK+K   DISG+ RALRRLRTA ERAKRTLSS  QTT+E+DSL+EG DF T+ITRARFE++N  LF+  +EPVE+
Sbjct:  240 LLEHFKAEFKKKTGLDISGDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFEGEDFETSITRARFEDINAALFKSTLEPVEQ 322          

HSP 2 Score: 92.0485 bits (227), Expect = 1.923e-45
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEG-NEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA++ KS + +VVLVGGSTRIPKVQ+LL DFF GK+L KSINPDE           IL+G   ++  +D                G V   +IPRNTT+PT K + F+T
Sbjct:  325 KDAQISKSQIDEVVLVGGSTRIPKVQKLLSDFFEGKQLEKSINPDEAVAYGAAVQAAILTGSNLSDDTKDLLLLDVAPLSLGVAMQGDVFACVIPRNTTVPTIKRRTFTT 434          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: GRP78_KLULA (78 kDa glucose-regulated protein homolog OS=Kluyveromyces lactis GN=GRP78 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.252e-45
Identity = 58/109 (53.21%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +D+ + K  + D+VLVGGSTRIPKVQQLL+ FFNGK+  K INPDE           +LSGE  E V+D             ET GGVMT LI RNT IPTKK Q+FST
Sbjct:  368 KDSGLQKEDIDDIVLVGGSTRIPKVQQLLEKFFNGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVEDIVLLDVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFST 474          

HSP 2 Score: 94.3597 bits (233), Expect = 4.252e-45
Identity = 43/84 (51.19%), Postives = 63/84 (75.00%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++V HF Q F++K+  D++ N +A+ +L+   E+AKR+LSS   T IEIDS + GIDF  T+TRA+FEELN+ LF+K ++PVEK
Sbjct:  282 KLVRHFAQLFQKKHDLDVTKNDKAMAKLKREAEKAKRSLSSQTSTRIEIDSFFNGIDFSETLTRAKFEELNLALFKKTLKPVEK 365          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 7.223e-45
Identity = 58/109 (53.21%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DAK+ KS + D+VLVGGSTRIPKVQ L+++FFNGK+  K INPDE           +LSGE  E  +D             ET GGVMT LIPRNT IPT+K Q+FST
Sbjct:  356 KDAKVSKSEIDDIVLVGGSTRIPKVQALIEEFFNGKKASKGINPDEAVAFGAAVQAGVLSGE--EGTEDIVLMDVNPLTLGIETTGGVMTKLIPRNTPIPTRKSQIFST 462          

HSP 2 Score: 90.5077 bits (223), Expect = 7.223e-45
Identity = 41/84 (48.81%), Postives = 63/84 (75.00%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++NHF + F +K+  D++ + +A+ +L+   E+AKRTLSS   T IEI++ Y+G DF  T+TRA+FEELN DLF+K ++PVE+
Sbjct:  270 RIINHFAKLFNKKHGVDVTKDAKAMGKLKREAEKAKRTLSSQMSTRIEIEAFYDGKDFSETLTRAKFEELNNDLFKKTLKPVEQ 353          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP72_PARLI (Heat shock 70 kDa protein II (Fragment) OS=Paracentrotus lividus GN=HSP70II PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.268e-45
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCER 263
            RMV H   EFKRK+KKDI+ N RA+RRLRTACERAKRTLSS+ Q  IEIDSL+EGID+YT++TRARFEELN DLFR  +EPVE   R
Sbjct:  236 RMVTHSSPEFKRKHKKDITPNKRAVRRLRTACERAKRTLSSSTQAKIEIDSLFEGIDYYTSVTRARFEELNSDLFRGTLEPVENALR 322          

HSP 2 Score: 74.7146 bits (182), Expect = 7.268e-45
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE 396
            RDAK+DK  +H++VLVGGSTRIPK+Q+ LQDFF+GKEL KSINPDE
Sbjct:  322 RDAKLDKEKIHEIVLVGGSTRIPKIQK-LQDFFHGKELNKSINPDE 366          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 9.414e-45
Identity = 59/108 (54.63%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA M+K  VH++VLVGGSTRIPKVQQL++DFF GKE  + INPDE           +LSGE  +                 ET GGVMT LIPRNT IPTKK QVFST
Sbjct:  348 DADMNKKDVHEIVLVGGSTRIPKVQQLVKDFFGGKEPSRGINPDEAVAYGAAVQAGVLSGE--QDTDAIVLLDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQVFST 453          

HSP 2 Score: 92.8189 bits (229), Expect = 9.414e-45
Identity = 43/84 (51.19%), Postives = 64/84 (76.19%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R+++HF++ +K+K  KDI  + RA+++LR   E+AKR LS + Q  IEI+S +EG DF  T+TRA+FEELN+DLFR  ++PV+K
Sbjct:  261 RVMDHFIKLYKKKKGKDIRKDNRAVQKLRREVEKAKRALSGSHQVRIEIESFFEGDDFSETLTRAKFEELNLDLFRSTLKPVQK 344          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP75_CANGA (Heat shock protein SSB OS=Candida glabrata GN=SSB1 PE=3 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 9.420e-45
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++ HF  EFK+K   DIS + RALRRLRTA ERAKRTLSS  QTT+E+DSL+EG DF  ++TRARFE+LN  LF+  +EPVE+
Sbjct:  240 LLEHFKGEFKKKTGLDISNDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFEGEDFEASLTRARFEDLNAALFKSTLEPVEQ 322          

HSP 2 Score: 94.3597 bits (233), Expect = 9.420e-45
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEG-NEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DAK+ KS + +VVLVGGSTRIPKVQ+LL D+F+GK+L KSINPDE           IL+G+  +++ +D                G +  V++PRNTT+PT K + F+T
Sbjct:  325 KDAKISKSQIDEVVLVGGSTRIPKVQKLLSDYFDGKQLEKSINPDEAVAYGAAVQGAILTGQSTSDETKDLLLLDVAPLSLGVGMQGDIFGVVVPRNTTVPTIKRRTFTT 434          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP76_YEAST (Heat shock protein SSB2 OS=Saccharomyces cerevisiae GN=SSB2 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 9.420e-45
Identity = 51/83 (61.45%), Postives = 66/83 (79.52%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++ HF  EFK+K   DIS + RALRRLRTA ERAKRTLSS  QTT+E+DSL++G DF +++TRARFE+LN  LF+  +EPVE+
Sbjct:  240 LLEHFKAEFKKKTGLDISDDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFDGEDFESSLTRARFEDLNAALFKSTLEPVEQ 322          

HSP 2 Score: 95.1301 bits (235), Expect = 9.420e-45
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEG-NEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DAK+ KS + +VVLVGGSTRIPKVQ+LL DFF+GK+L KSINPDE           IL+G+  +++ +D                G +  +++PRNTT+PT K + F+T
Sbjct:  325 KDAKISKSQIDEVVLVGGSTRIPKVQKLLSDFFDGKQLEKSINPDEAVAYGAAVQGAILTGQSTSDETKDLLLLDVAPLSLGVGMQGDIFGIVVPRNTTVPTIKRRTFTT 434          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP75_KLUDE (Heat shock protein SSB OS=Kluyveromyces delphensis GN=SSB PE=3 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.228e-44
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++ HF  +FK+K   DIS + RALRRLRTA ERAKRTLSS  QTT+E+DSL++G DF  ++TRARFE+LN  LF+  +EPVE+
Sbjct:  240 LLEHFKSDFKKKTGLDISNDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFDGEDFEASLTRARFEDLNAALFKSTLEPVEQ 322          

HSP 2 Score: 95.5153 bits (236), Expect = 1.228e-44
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEG-NEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DAK+ KS + +VVLVGGSTRIPKVQ+LL DFF+GK+L KSINPDE           IL+G+  +++ +D                G +  V++PRNTT+PT K + F+T
Sbjct:  325 KDAKISKSQIDEVVLVGGSTRIPKVQKLLSDFFDGKQLEKSINPDEAVAYGAAVQGAILTGQSTSDETKDLLLLDVAPLSLGVGMQGDIFGVVVPRNTTVPTIKRRTFTT 434          
The following BLAST results are available for this feature:
BLAST of CB417297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_PICAN8.682e-4652.7878 kDa glucose-regulated protein homolog OS=Pichia... [more]
HSP75_CANAL1.476e-4561.45Heat shock protein SSB1 OS=Candida albicans GN=SSB... [more]
HSP75_ASHGO1.923e-4565.06Heat shock protein SSB OS=Ashbya gossypii GN=SSB P... [more]
GRP78_KLULA4.252e-4553.2178 kDa glucose-regulated protein homolog OS=Kluyve... [more]
GRP78_NEUCR7.223e-4553.2178 kDa glucose-regulated protein homolog OS=Neuros... [more]
HSP72_PARLI7.268e-4572.41Heat shock 70 kDa protein II (Fragment) OS=Paracen... [more]
HSP7C_DROME9.414e-4554.63Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
HSP75_CANGA9.420e-4562.65Heat shock protein SSB OS=Candida glabrata GN=SSB1... [more]
HSP76_YEAST9.420e-4561.45Heat shock protein SSB2 OS=Saccharomyces cerevisia... [more]
HSP75_KLUDE1.228e-4460.24Heat shock protein SSB OS=Kluyveromyces delphensis... [more]

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Properties
Property NameValue
Genbank descriptionEST0370 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P015 similar to 70 kDa heat shock protein (acc# AAL24367), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417297 ID=CB417297; Name=CB417297; organism=Citrus sinensis; type=EST; length=590bp
ACAGAATGGTGAACCACTTTGTTCAAGAGTTCAAGAGGAAAAACAAGAAG
GATATTAGTGGAAACCCCAGAGCGTTGAGGAGGTTGAGAACTGCCTGTGA
AAGGGCTAAGAGGACCCTGTCATCAACCGCACAGACTACAATTGAGATTG
ATTCTTTATATGAGGGTATTGATTTCTACACAACCATTACAAGGGCTAGA
TTCGAAGAGTTGAACATGGATTTGTTCAGGAAGTGTATGGAGCCAGTGGA
GAAATGCGAGAGATGCTAAGATGGACAAGAGCAGTGTCCATGATGTGGTT
CTTGTTGGTGGGTCTACTAGGATCCCAAAAGTCCAGCAACTGTTGCAGGA
CTTCTTCAATGGAAAAGAGCTATGCAAGAGCATCAACCCTGATGAAGCGG
TTGCCTACGGTGCTGCTGTGCAGGCTGCAATCTTGAGTGGTGAGGGTAAT
GAGAAGGTTCAGGACCTCTTATTGCTTGACGTCACCCCTCTATCGCTGGG
TTTGGAGACTGCTGGTGGAGTCATGACTGTGTTGATTCCAAGGAACACCA
CTATTCCAACCAAGAAGGAGCAGGTGTTCTCCACATACTC
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