CB417297

Overview
NameCB417297
Unique NameCB417297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: GRP78_ECHGR (78 kDa glucose-regulated protein OS=Echinococcus granulosus GN=GRP78 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.509e-43
Identity = 54/108 (50.00%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            D+ + K  + D+VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           ++SG   E   D             ET GGVMT LIPRNT IPTKK Q+FST
Sbjct:  347 DSGLKKEDIDDIVLVGGSTRIPKIQQLVKEFFNGKEPIRGINPDEAVAYGAAVQAGVISGV--EDTGDIVLLDVCPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFST 452          

HSP 2 Score: 92.4337 bits (228), Expect = 6.509e-43
Identity = 45/84 (53.57%), Postives = 64/84 (76.19%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++++FV+ +K+K  KDI+ + RA+++LR   E+AKRTLS+   T IEID+L+EG DF   +TRARFEELN DLFR  ++PV K
Sbjct:  260 RLIDYFVKLYKKKEGKDITKDDRAVQKLRREVEKAKRTLSTEHSTMIEIDNLFEGKDFSEPLTRARFEELNNDLFRSTLKPVMK 343          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: GRP78_DEBHA (78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.105e-42
Identity = 59/109 (54.13%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA   KS V D+VLVGGSTRIPKVQ+LL+ FF+GK+  K INPDE           +LSGE  E V D             ET GGVMT LI RNT IPTKK Q+FST
Sbjct:  366 KDAGFKKSDVDDIVLVGGSTRIPKVQELLEKFFDGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVHDIVLLDVNPLTLGIETTGGVMTTLINRNTAIPTKKSQIFST 472          

HSP 2 Score: 87.8113 bits (216), Expect = 1.105e-42
Identity = 41/84 (48.81%), Postives = 62/84 (73.81%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++V +    FK+K+  DISGN +A+ +L+   E+AKRTLSS   T IEIDS  +GIDF  T++RA+FEELN++ F+K ++PV++
Sbjct:  280 KVVRYLSSVFKKKHNIDISGNSKAISKLKRETEKAKRTLSSQMSTRIEIDSFVDGIDFSETLSRAKFEELNIESFKKTLKPVQQ 363          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: GRP78_ASHGO (78 kDa glucose-regulated protein homolog OS=Ashbya gossypii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.105e-42
Identity = 55/109 (50.46%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA + K  + D+VLVGGSTRIPKVQ+LL++FFN K+  K INPDE           +LSGE  E V+D             E  GG+MT LI RNT IPTKK Q+FST
Sbjct:  364 QDAGLKKEDIDDIVLVGGSTRIPKVQELLENFFN-KKASKGINPDEAVAYGAAVQAGVLSGE--EGVEDIVLLDVNPLTLGIEVTGGIMTPLIKRNTPIPTKKSQIFST 469          

HSP 2 Score: 95.9005 bits (237), Expect = 1.105e-42
Identity = 42/84 (50.00%), Postives = 64/84 (76.19%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++V HF++ FK+K+  D+S N +A+ +L+   E+AKR LSS   T +EIDS  +GIDF  T+TRA+FEE+N+DLF++ ++PVEK
Sbjct:  278 KLVRHFLKVFKKKHGVDVSSNAKAMAKLKREAEKAKRALSSQMSTRVEIDSFVDGIDFSETLTRAKFEEMNLDLFKRTLKPVEK 361          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: GRP78_APLCA (78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.876e-42
Identity = 55/108 (50.93%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +    + ++VLVGGSTRIPKVQQL++++FNGKE  + INPDE           +LSGE  E   D             ET GGVMT LIPRNT IPTKK Q+FST
Sbjct:  357 DADLKTDDIDEIVLVGGSTRIPKVQQLVKEYFNGKEPSRGINPDEAVAYGAAVQAGVLSGE--EDTGDLVLLDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFST 462          

HSP 2 Score: 90.5077 bits (223), Expect = 1.876e-42
Identity = 42/84 (50.00%), Postives = 63/84 (75.00%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++ HF++ +K+K  KDI  + RA+++LR   E+AKR LSS  Q  +EI+S ++G DF  ++TRA+FEELNMDLFR  M+PV++
Sbjct:  270 RVMEHFIKLYKKKKGKDIRKDNRAVQKLRREVEKAKRALSSAHQVRLEIESFFDGEDFSESLTRAKFEELNMDLFRSTMKPVKQ 353          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: GRP78_ECHMU (78 kDa glucose-regulated protein OS=Echinococcus multilocularis GN=GRP78 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.049e-42
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            D+ + K  + D+VLVGGSTRIPK+QQL+++FFN KE  + INPDE           ++SG   E   D             ET GGVMT LIPRNT IPTKK Q+FST
Sbjct:  347 DSGLKKEDIDDIVLVGGSTRIPKIQQLVKEFFNVKEPSRGINPDEAVAYGAAVQAGVISGV--EDTGDIVLLDVCPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFST 452          

HSP 2 Score: 92.4337 bits (228), Expect = 7.049e-42
Identity = 45/84 (53.57%), Postives = 64/84 (76.19%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++++FV+ +K+K  KDI+ + RA+++LR   E+AKRTLS+   T IEID+L+EG DF   +TRARFEELN DLFR  ++PV K
Sbjct:  260 RLIDYFVKLYKKKEGKDITKDDRAVQKLRREVEKAKRTLSTEHSTMIEIDNLFEGKDFSEPLTRARFEELNNDLFRSTLKPVMK 343          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFO (78 kDa glucose-regulated protein homolog OS=Plasmodium falciparum (isolate NF54) PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.336e-40
Identity = 55/111 (49.55%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDF--FNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTY 588
            DAK +KS + ++VLVGGSTRIPK+QQ++++F  FNGKE  + INPDE           I+ GE   ++QD             ET GG+MT LI RNT IPTKK Q FSTY
Sbjct:  346 DAKYEKSKIDEIVLVGGSTRIPKIQQIIKEFEFFNGKEPNRGINPDEAVAYGAAIQAGIILGE---ELQDVVLLDVTPLTLGIETVGGIMTQLIKRNTVIPTKKSQTFSTY 453          

HSP 2 Score: 84.3445 bits (207), Expect = 6.336e-40
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++++F++ FK+KN  D+  + RA+++LR   E AKR LS    T IEI+ + EG +F  T+TRA+FEELN DLFR+ +EPV+K
Sbjct:  259 RVMDYFIKMFKKKNNIDLRTDKRAIQKLRKEVEIAKRNLSVVHSTQIEIEDIVEGHNFSETLTRAKFEELNDDLFRETLEPVKK 342          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: GRP78_SCHPO (78 kDa glucose-regulated protein homolog OS=Schizosaccharomyces pombe GN=bip1 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.163e-38
Identity = 54/109 (49.54%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +D+ + KS + D+VLVGGSTRIPKVQ+LL+ FF GK+  K INPDE           +LSGE  E   +             ET GGVMT LI RNT IPT+K Q+FST
Sbjct:  352 KDSNLKKSEIDDIVLVGGSTRIPKVQELLESFF-GKKASKGINPDEAVAYGAAVQAGVLSGE--EGSDNIVLLDVIPLTLGIETTGGVMTKLIGRNTPIPTRKSQIFST 457          

HSP 2 Score: 85.5001 bits (210), Expect = 1.163e-38
Identity = 38/84 (45.24%), Postives = 61/84 (72.62%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++N+  + + RKN  D++ + +A+ +L+   E+AKRTLSS     IEI+S + G DF  T++RA+FEE+NMDLF+K ++PVE+
Sbjct:  266 RVINYLARTYNRKNNVDVTKDLKAMGKLKREVEKAKRTLSSQKSVRIEIESFFNGQDFSETLSRAKFEEINMDLFKKTLKPVEQ 349          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP77_HUMAN (Putative heat shock 70 kDa protein 7 OS=Homo sapiens GN=HSPA7 PE=5 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.783e-32
Identity = 76/130 (58.46%), Postives = 93/130 (71.54%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCER-C*DGQEQCP*CGSCWWVY*DPKSPATVAGLLQWKRAMQEHQP 389
            R+VNHF++EF+RK+ KD+SGN RALRRLRTACERAKRT SS+ Q T+EIDSL+EG+DFY +ITRARFEEL  DLFR  +EPVEK  R     + Q         ++  P+     AGLLQ + A QEHQP
Sbjct:  238 RLVNHFMEEFRRKHGKDLSGNKRALRRLRTACERAKRTPSSSTQATLEIDSLFEGVDFYKSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDFVLGGGLHSHPQGAEVAAGLLQRQGAEQEHQP 367          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_RHOMR (Chaperone protein dnaK OS=Rhodothermus marinus GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.127e-30
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DAK+ K  + +V+LVGGSTRIP VQ+ +++FF GK+  KS+NPDE           +LSGE    VQD             ET GGVMTVLIP NTTIPT+K ++F+T
Sbjct:  323 KDAKLRKEDIDEVILVGGSTRIPLVQRTVEEFF-GKKANKSVNPDEVVAIGAAIQAGVLSGE----VQDVLLLDVTPLNLGIETLGGVMTVLIPANTTIPTRKSEIFTT 426          

HSP 2 Score: 54.299 bits (129), Expect = 6.127e-30
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEG-IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++++   EF+++   D+  +P AL+RL+ A E+AK  LSS  +TT+    I +  EG       ITRA+FE+L  DL  + + P+E+
Sbjct:  233 RLIDYIADEFQKQEGIDLRKDPMALQRLKEAAEKAKIELSSAMKTTVNLPFITATAEGPKHLVMEITRAKFEQLIEDLVARTIPPMEQ 320          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_PSEU2 (Chaperone protein dnaK OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dnaK PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.985e-29
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA +D+S ++DV+LVGG TR+P VQ+L+ +FF GKE  K +NPDE           +L+G+    V+D             ET GGVMT LI +NTTIPTKK QVFST
Sbjct:  325 KDAGIDRSKINDVILVGGQTRMPLVQKLVTEFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD----VKDVLLLDVSPLTLGIETMGGVMTALIEKNTTIPTKKSQVFST 428          

HSP 2 Score: 54.6842 bits (130), Expect = 2.985e-29
Identity = 28/87 (32.18%), Postives = 52/87 (59.77%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYTTITRARFEELNMDLFRKCMEPVE 251
            R++++FV EFK+++  ++ G+P A++RL+ A E+AK  LSS+ QT + +  +             I+R++ E L  DL ++ + P E
Sbjct:  235 RLIDYFVDEFKKESGMNLKGDPLAMQRLKEAAEKAKIELSSSTQTEVNLPYITADATGPKHLVVKISRSKLESLVEDLVQRTIAPCE 321          
The following BLAST results are available for this feature:
BLAST of CB417297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_ECHGR6.509e-4350.0078 kDa glucose-regulated protein OS=Echinococcus g... [more]
GRP78_DEBHA1.105e-4254.1378 kDa glucose-regulated protein homolog OS=Debary... [more]
GRP78_ASHGO1.105e-4250.4678 kDa glucose-regulated protein homolog OS=Ashbya... [more]
GRP78_APLCA1.876e-4250.9378 kDa glucose-regulated protein OS=Aplysia califo... [more]
GRP78_ECHMU7.049e-4249.0778 kDa glucose-regulated protein OS=Echinococcus m... [more]
GRP78_PLAFO6.336e-4049.5578 kDa glucose-regulated protein homolog OS=Plasmo... [more]
GRP78_SCHPO1.163e-3849.5478 kDa glucose-regulated protein homolog OS=Schizo... [more]
HSP77_HUMAN2.783e-3258.46Putative heat shock 70 kDa protein 7 OS=Homo sapie... [more]
DNAK_RHOMR6.127e-3048.62Chaperone protein dnaK OS=Rhodothermus marinus GN=... [more]
DNAK_PSEU22.985e-2947.71Chaperone protein dnaK OS=Pseudomonas syringae pv.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0370 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P015 similar to 70 kDa heat shock protein (acc# AAL24367), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417297 ID=CB417297; Name=CB417297; organism=Citrus sinensis; type=EST; length=590bp
ACAGAATGGTGAACCACTTTGTTCAAGAGTTCAAGAGGAAAAACAAGAAG
GATATTAGTGGAAACCCCAGAGCGTTGAGGAGGTTGAGAACTGCCTGTGA
AAGGGCTAAGAGGACCCTGTCATCAACCGCACAGACTACAATTGAGATTG
ATTCTTTATATGAGGGTATTGATTTCTACACAACCATTACAAGGGCTAGA
TTCGAAGAGTTGAACATGGATTTGTTCAGGAAGTGTATGGAGCCAGTGGA
GAAATGCGAGAGATGCTAAGATGGACAAGAGCAGTGTCCATGATGTGGTT
CTTGTTGGTGGGTCTACTAGGATCCCAAAAGTCCAGCAACTGTTGCAGGA
CTTCTTCAATGGAAAAGAGCTATGCAAGAGCATCAACCCTGATGAAGCGG
TTGCCTACGGTGCTGCTGTGCAGGCTGCAATCTTGAGTGGTGAGGGTAAT
GAGAAGGTTCAGGACCTCTTATTGCTTGACGTCACCCCTCTATCGCTGGG
TTTGGAGACTGCTGGTGGAGTCATGACTGTGTTGATTCCAAGGAACACCA
CTATTCCAACCAAGAAGGAGCAGGTGTTCTCCACATACTC
back to top