CB417297

Overview
NameCB417297
Unique NameCB417297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_SULNB (Chaperone protein dnaK OS=Sulfurovum sp. (strain NBC37-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.259e-26
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA + K+ V +VV+VGGSTR+P VQ+ ++ FFN KEL KS+NPDE           +L+G+    V+D             ET GGVMT +I + TTIP KK Q+FST
Sbjct:  319 KDAGLSKNDVKEVVMVGGSTRVPLVQEEVKKFFN-KELNKSVNPDEVVALGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKVIEKGTTIPAKKSQIFST 422          

HSP 2 Score: 51.2174 bits (121), Expect = 6.259e-26
Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVE 251
            R++++   EFK ++  DI  +  AL+R++ A E AK+ LSS  +T I +  +           T ITRA+FE L  DL  K ++ +E
Sbjct:  229 RIIDYVADEFKSESGIDIKADVMALQRVKDAAEAAKKELSSATETEINLPFITADASGPKHLVTKITRAKFESLIGDLVAKTIKTIE 315          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_RICPR (Chaperone protein dnaK OS=Rickettsia prowazekii GN=dnaK PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.259e-26
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA    + + +VVLVGG TR+PKVQ+ ++ FF G+E  K +NPDE           +L    N++V D             ET GGV T LI RNTTIP+KK QVFST
Sbjct:  319 KDAGFKPNDIQEVVLVGGMTRMPKVQEAVKKFF-GREPHKGVNPDEVVALGAAIQGGVL----NKEVTDILLLDVTPLSLGIETLGGVFTRLIDRNTTIPSKKSQVFST 422          

HSP 2 Score: 56.6102 bits (135), Expect = 6.259e-26
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYTTITRARFEELNMDLFRKCMEP 245
            R++NH ++ FK+++  D+S +P AL+RL+ A E+AK+ LSST+ T I +  +              TRA  E+L  DL  K +EP
Sbjct:  229 RILNHLIEVFKKESGIDLSKDPLALQRLKEAAEKAKKELSSTSTTDINLPYITADSTGPKHLNIKFTRAELEKLVDDLIEKTIEP 313          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_CLONN (Chaperone protein dnaK OS=Clostridium novyi (strain NT) GN=dnaK PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.261e-26
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA++  + +  VVLVGGSTRIP VQ+ +Q F  GKE  K +NPDE           +L+GE    V+D             ET GGV T LI RNTTIPT+K Q+FST
Sbjct:  298 DAELTINDIDKVVLVGGSTRIPAVQEAVQKF-TGKEPSKGVNPDEVVAMGAAVQAGVLTGE----VKDILLLDVTPLTLGIETMGGVATPLIERNTTIPTRKSQIFST 400          

HSP 2 Score: 53.5286 bits (127), Expect = 6.261e-26
Identity = 31/90 (34.44%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYTTITRARFEELNMDLFRKCMEPVEK 254
            +++++  + FK +N  D+  +  AL+RL+ A E+AK  LSS+ +T I +  +       + ID    +TRA+FEEL+ DL +  +EP++K
Sbjct:  207 KIMDYIAETFKAENGIDLRNDKMALQRLKEAAEKAKIELSSSTKTNINLPFITADATGPKHIDM--DLTRAKFEELSADLVQATIEPMKK 294          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_TETHA (Chaperone protein dnaK OS=Tetragenococcus halophilus GN=dnaK PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.261e-26
Identity = 48/109 (44.04%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA + +S +  V+LVGGSTRIP V + ++    GKE  KS+NPDE           ++SG+    V+D             ET GGV T LI RNTTIPT K QVFST
Sbjct:  296 KDADLSQSDIDQVILVGGSTRIPSVVESVRKE-TGKEPNKSVNPDEVVAMGAAIQAGVISGD----VKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFST 399          

HSP 2 Score: 58.151 bits (139), Expect = 6.261e-26
Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEK 254
            +++++ V EFK++N  D+S +  AL+RL+ A E+AK+ LS  + T I +  +  G D        +TRA+F+EL   L  +  EPV +
Sbjct:  206 KIIDYMVSEFKKENGIDLSKDKMALQRLKDAAEKAKKDLSGVSSTQISLPFITAGEDGPLHLEMNMTRAKFDELTSSLVDRTKEPVRQ 293          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_SYMTH (Chaperone protein dnaK OS=Symbiobacterium thermophilum GN=dnaK PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.262e-26
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA ++   +  V+LVGGSTRIP VQ+ ++ FF GKE  K INPDE           ++ G+    V+D             ET GGV T LI RNTTIPT+K Q+FST
Sbjct:  296 QDAGLEPGEIDKVLLVGGSTRIPAVQEAVRRFF-GKEPYKGINPDEVVAMGAAIQAAVIKGD----VKDVLLLDVTPLSLGIETLGGVFTKLIERNTTIPTRKSQIFST 399          

HSP 2 Score: 55.4546 bits (132), Expect = 6.262e-26
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEK 254
            R+VN+    F+R++  D+  + +AL+RLR A E+AK  LSS   T I +  +    D       T+TRA+FEEL  DL    M P  +
Sbjct:  206 RIVNYLADRFQREHGIDLRKDKQALQRLREAAEKAKIELSSVTTTNINLPFISMTADGPVHMDETLTRAKFEELTADLVEATMGPTRQ 293          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: HSP7M_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=AN6010 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.139e-26
Identity = 49/109 (44.95%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA +  S V D++LVGG TR+PKV + ++  F G+E  KS+NPDE           +L+GE    V D             ET GGV T LI RNTTIPTKK Q FST
Sbjct:  359 KDANLQSSEVQDIILVGGMTRMPKVTESVKSLF-GREPAKSVNPDEAVAIGAAIQGAVLAGE----VTDVLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQTFST 462          

HSP 2 Score: 52.373 bits (124), Expect = 8.139e-26
Identity = 30/87 (34.48%), Postives = 49/87 (56.32%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEK 254
            +V H VQ+FK+++  D+S +  A++R+R A E+AK  LSS+ QT I +  +             +TRA+ E L   L  + ++PV K
Sbjct:  270 LVRHIVQQFKKESGLDLSNDRMAIQRIREAAEKAKIELSSSLQTEINLPFITADASGAKHINLKMTRAQLESLVEPLISRTVDPVRK 356          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_HAHCH (Chaperone protein dnaK OS=Hahella chejuensis (strain KCTC 2396) GN=dnaK PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.144e-26
Identity = 48/109 (44.04%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +D+    S + +V+LVGG TR+P VQ  + DFF GKE  K +NPDE           +LSG+    V+D             ET GGV T +I +NTTIPTKK QVFST
Sbjct:  324 KDSGCSSSEIDEVILVGGQTRMPLVQSKVADFF-GKEARKDVNPDEAVAIGAAIQGAVLSGD----VKDVLLLDVTPLSLSIETMGGVSTPIIEKNTTIPTKKSQVFST 427          

HSP 2 Score: 54.299 bits (129), Expect = 8.144e-26
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEP 245
            R++++  QEFK+ +  D+ G+P A++RL+ A E+AK  LSS+ QT + +  +             +TRA+ E L  +L  + +EP
Sbjct:  234 RLIDYLAQEFKKDSGIDLKGDPLAMQRLKEAAEKAKIELSSSQQTDVNLPYITADASGPKHLNVKVTRAKLESLVEELVERSLEP 318          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK2_PHOPR (Chaperone protein dnaK 2 OS=Photobacterium profundum GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.144e-26
Identity = 49/108 (45.37%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  + + DV+LVGG TR+P VQ  + +FF GKE  K +NPDE           +L+GE    V+D             ET GGVMT LI +NTTIPTK  QVFST
Sbjct:  326 DANLSITDITDVILVGGQTRMPMVQAKVTEFF-GKEPRKDVNPDEAVAVGAAIQAGVLAGE----VKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIPTKANQVFST 428          

HSP 2 Score: 54.6842 bits (130), Expect = 8.144e-26
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYTTITRARFEELNMDLFRKCMEPVE 251
            RM+N+ V EFK++   D+  +P A++R++ A E+AK  LSS  QT + +  +             +TRA+ E L  DL ++ +EP++
Sbjct:  235 RMINYLVGEFKKEQGIDLKSDPLAMQRVKEAAEKAKIELSSAQQTDVNLPYVTADAAGPKHMNVKVTRAKLESLVEDLVQRTLEPLK 321          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_RHILO (Chaperone protein dnaK OS=Rhizobium loti GN=dnaK PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.144e-26
Identity = 49/109 (44.95%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA +    + +VVLVGG TR+PK+Q++++ FF GKE  K +NPDE           +L G+    V+D             ET GGV T LI RNTTIPTKK QVFST
Sbjct:  320 KDAGLKAGEIDEVVLVGGMTRMPKIQEIVKQFF-GKEPHKGVNPDEVVALGAAIQAGVLQGD----VKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQVFST 423          

HSP 2 Score: 51.6026 bits (122), Expect = 8.144e-26
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYTTITRARFEELNMDLFRKCMEP 245
            R+V +   EFK++   D+  +  AL+RL+ A E+AK  LSST QT I +  +             +TRA+FE L  DL ++ ++P
Sbjct:  230 RLVEYLAAEFKKEQGIDLKNDKLALQRLKEAAEKAKIELSSTTQTEINLPFITADATGPKHLTLKLTRAKFESLVEDLVQRTIDP 314          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_DESDG (Chaperone protein dnaK OS=Desulfovibrio desulfuricans (strain G20) GN=dnaK PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.144e-26
Identity = 51/108 (47.22%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  S V +VVLVGG TR+P VQ+ + DFF GKE  +S+NPDE           IL+G+    V+D             ET GGV T LI RNTTIPTKK Q F+T
Sbjct:  320 DAGLSASEVDEVVLVGGMTRMPLVQKKVADFF-GKEPNRSMNPDEVVSMGAAIQGGILAGD----VKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQTFTT 422          

HSP 2 Score: 55.0694 bits (131), Expect = 8.144e-26
Identity = 30/88 (34.09%), Postives = 53/88 (60.23%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            R++N+ V+EF+R+N  D+S +  AL+RL+ A E+AK+ LS++ +T I +  +             ++RA+ E+L  DL  + +EP  K
Sbjct:  229 RVINYLVEEFRRENGIDLSRDRMALQRLKEAAEKAKKDLSTSMETEINLPFITADQTGPKHLMIKLSRAKLEKLVEDLVERTIEPCRK 316          
The following BLAST results are available for this feature:
BLAST of CB417297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SULNB6.259e-2644.95Chaperone protein dnaK OS=Sulfurovum sp. (strain N... [more]
DNAK_RICPR6.259e-2644.04Chaperone protein dnaK OS=Rickettsia prowazekii GN... [more]
DNAK_CLONN6.261e-2646.30Chaperone protein dnaK OS=Clostridium novyi (strai... [more]
DNAK_TETHA6.261e-2644.04Chaperone protein dnaK OS=Tetragenococcus halophil... [more]
DNAK_SYMTH6.262e-2644.04Chaperone protein dnaK OS=Symbiobacterium thermoph... [more]
HSP7M_EMENI8.139e-2644.95Heat shock 70 kDa protein OS=Emericella nidulans G... [more]
DNAK_HAHCH8.144e-2644.04Chaperone protein dnaK OS=Hahella chejuensis (stra... [more]
DNAK2_PHOPR8.144e-2645.37Chaperone protein dnaK 2 OS=Photobacterium profund... [more]
DNAK_RHILO8.144e-2644.95Chaperone protein dnaK OS=Rhizobium loti GN=dnaK P... [more]
DNAK_DESDG8.144e-2647.22Chaperone protein dnaK OS=Desulfovibrio desulfuric... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0370 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P015 similar to 70 kDa heat shock protein (acc# AAL24367), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417297 ID=CB417297; Name=CB417297; organism=Citrus sinensis; type=EST; length=590bp
ACAGAATGGTGAACCACTTTGTTCAAGAGTTCAAGAGGAAAAACAAGAAG
GATATTAGTGGAAACCCCAGAGCGTTGAGGAGGTTGAGAACTGCCTGTGA
AAGGGCTAAGAGGACCCTGTCATCAACCGCACAGACTACAATTGAGATTG
ATTCTTTATATGAGGGTATTGATTTCTACACAACCATTACAAGGGCTAGA
TTCGAAGAGTTGAACATGGATTTGTTCAGGAAGTGTATGGAGCCAGTGGA
GAAATGCGAGAGATGCTAAGATGGACAAGAGCAGTGTCCATGATGTGGTT
CTTGTTGGTGGGTCTACTAGGATCCCAAAAGTCCAGCAACTGTTGCAGGA
CTTCTTCAATGGAAAAGAGCTATGCAAGAGCATCAACCCTGATGAAGCGG
TTGCCTACGGTGCTGCTGTGCAGGCTGCAATCTTGAGTGGTGAGGGTAAT
GAGAAGGTTCAGGACCTCTTATTGCTTGACGTCACCCCTCTATCGCTGGG
TTTGGAGACTGCTGGTGGAGTCATGACTGTGTTGATTCCAAGGAACACCA
CTATTCCAACCAAGAAGGAGCAGGTGTTCTCCACATACTC
back to top