CB417297

Overview
NameCB417297
Unique NameCB417297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:800..1391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK1_PHOPR (Chaperone protein dnaK 1 OS=Photobacterium profundum GN=dnaK1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.144e-26
Identity = 47/108 (43.52%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  S + D+++VGG TR+P VQ  + +FF GKE  K +NPDE           +L+G+    V+D             ET GGVMT LI +NTTIPTK  QVFST
Sbjct:  326 DAGLSVSEITDIIVVGGQTRMPMVQAKVAEFF-GKEPRKDVNPDEAVAVGAAVQAGVLAGD----VKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIPTKANQVFST 428          

HSP 2 Score: 56.6102 bits (135), Expect = 8.144e-26
Identity = 29/87 (33.33%), Postives = 51/87 (58.62%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYTTITRARFEELNMDLFRKCMEPVE 251
            R++N+ V+EFK++   D+  +P A++RL+ A E+AK  LSS  QT + +  +             +TRA+ E L  DL ++ +EP++
Sbjct:  235 RLINYLVEEFKKEQGMDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVQRSLEPLK 321          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_SHELP (Chaperone protein dnaK OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.144e-26
Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  S +++V+LVGG TR+PKV+  +  FF GKEL + +NPDE           +L+G+    V+D             ET G VMT LI +NTTIPTK  Q FST
Sbjct:  325 DADLSVSDINEVILVGGQTRMPKVRAEVSAFF-GKELRQDVNPDEAVAIGAAVQAGVLAGD----VKDVLLLDVTPLSLGIETMGSVMTKLIEKNTTIPTKASQTFST 427          

HSP 2 Score: 58.5362 bits (140), Expect = 8.144e-26
Identity = 30/87 (34.48%), Postives = 50/87 (57.47%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYTTITRARFEELNMDLFRKCMEPVE 251
            R++N+   EFK++   D+  +P A++RL+ A E+AK  LSST QT + +  +             ITRA+ E L  DL ++ +EP++
Sbjct:  234 RLINYLADEFKKEQSLDLRNDPLAMQRLKEAAEKAKIELSSTTQTEVNLPYITADATGPKHLVVKITRAKLESLVEDLIQRSLEPLK 320          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS5 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.145e-26
Identity = 50/109 (45.87%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA + KS + +VVLVGG TR+P+V + +  FF GKE  K +NPDE           +L G+    V+D             ET GGV T LI RNTTIPTKK QVFST
Sbjct:  321 KDAGVSKSDIDEVVLVGGMTRMPRVVEEVTKFF-GKEPHKGVNPDEVVALGAAIQAGVLQGD----VKDVVLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFST 424          

HSP 2 Score: 54.299 bits (129), Expect = 8.145e-26
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYT--------TITRARFEELNMDLFRKCMEPVE 251
            R+VN+   EFK+++  D++ +  AL+RL+ A E+AK  LSS+ QT  EI+  +  +D  T         +TRA+ E L  DL +K ++P E
Sbjct:  229 RIVNYLADEFKKEHGVDLTLDKMALQRLKEAAEKAKIELSSSQQT--EINQPFISMDRNTGQPLHMVMKLTRAKLESLVADLIKKSLKPCE 317          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_LEUMM (Chaperone protein dnaK OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=dnaK PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.149e-26
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA +  S + +V+L GGSTRIP VQ+ ++    GKE   SINPDE           +++G+    V+D             ET GGV T LI RNTTIPT K QVFST
Sbjct:  296 KDAGLSFSDIDEVILNGGSTRIPAVQESVKKM-TGKEPNHSINPDEAVALGAAVQGGVITGD----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFST 399          

HSP 2 Score: 61.2326 bits (147), Expect = 8.149e-26
Identity = 30/86 (34.88%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPV 248
            +++++  ++FK +N  D+  +  AL+RL+ A E AK+TLSS  +  I++  +  G    +   T++TRA+F EL  DL +K  +PV
Sbjct:  206 KVIDYLAEQFKSENGVDLKDDKLALQRLKDAAESAKKTLSSANEAQIDLPFIASGDNGPLHLQTSLTRAKFNELTADLIKKAEQPV 291          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STRTD (Chaperone protein dnaK OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=dnaK PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.150e-26
Identity = 48/108 (44.44%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  S + +V+LVGGSTRIP V + ++    GKE  KS+NPDE           ++SG+    V+D             ET GGV T LI RNTTIPT K QVFST
Sbjct:  296 DAGLSLSDIDEVILVGGSTRIPAVVEAVKAE-TGKEPNKSVNPDEVVAMGAAIQGGVISGD----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFST 398          

HSP 2 Score: 59.6918 bits (143), Expect = 8.150e-26
Identity = 30/88 (34.09%), Postives = 53/88 (60.23%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            +++++ V+EFK++N  D+S +  AL+RL+ A E+AK+ LS    T I +  +  G    +    T+TRA+F++L  DL  +   PV +
Sbjct:  205 KIIDYMVEEFKKENGIDLSTDKMALQRLKDAAEKAKKDLSGVTSTQISLPFITAGEAGPLHLEMTLTRAKFDDLTRDLVERTKTPVRQ 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STRT2 (Chaperone protein dnaK OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dnaK PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.150e-26
Identity = 48/108 (44.44%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  S + +V+LVGGSTRIP V + ++    GKE  KS+NPDE           ++SG+    V+D             ET GGV T LI RNTTIPT K QVFST
Sbjct:  296 DAGLSLSDIDEVILVGGSTRIPAVVEAVKAE-TGKEPNKSVNPDEVVAMGAAIQGGVISGD----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFST 398          

HSP 2 Score: 59.6918 bits (143), Expect = 8.150e-26
Identity = 30/88 (34.09%), Postives = 53/88 (60.23%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            +++++ V+EFK++N  D+S +  AL+RL+ A E+AK+ LS    T I +  +  G    +    T+TRA+F++L  DL  +   PV +
Sbjct:  205 KIIDYMVEEFKKENGIDLSTDKMALQRLKDAAEKAKKDLSGVTSTQISLPFITAGEAGPLHLEMTLTRAKFDDLTRDLVERTKTPVRQ 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STRT1 (Chaperone protein dnaK OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dnaK PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.150e-26
Identity = 48/108 (44.44%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  S + +V+LVGGSTRIP V + ++    GKE  KS+NPDE           ++SG+    V+D             ET GGV T LI RNTTIPT K QVFST
Sbjct:  296 DAGLSLSDIDEVILVGGSTRIPAVVEAVKAE-TGKEPNKSVNPDEVVAMGAAIQGGVISGD----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFST 398          

HSP 2 Score: 59.6918 bits (143), Expect = 8.150e-26
Identity = 30/88 (34.09%), Postives = 53/88 (60.23%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            +++++ V+EFK++N  D+S +  AL+RL+ A E+AK+ LS    T I +  +  G    +    T+TRA+F++L  DL  +   PV +
Sbjct:  205 KIIDYMVEEFKKENGIDLSTDKMALQRLKDAAEKAKKDLSGVTSTQISLPFITAGEAGPLHLEMTLTRAKFDDLTRDLVERTKTPVRQ 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STRU0 (Chaperone protein dnaK OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=dnaK PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.150e-26
Identity = 48/112 (42.86%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  250 RNARDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            R   DA +  S + +V+LVGGSTRIP V + ++    GKE  KS+NPDE           +++G+    V+D             ET GGV T LI RNTTIPT K QVFST
Sbjct:  292 RALSDAGLSLSEIDEVILVGGSTRIPAVVEAVKAE-TGKEPNKSVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFST 398          

HSP 2 Score: 60.4622 bits (145), Expect = 8.150e-26
Identity = 30/88 (34.09%), Postives = 54/88 (61.36%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            +++++ V+EFK++N  D+S +  AL+RL+ A E+AK+ LS   QT I +  +  G    +    ++TRA+F++L  DL  +   PV +
Sbjct:  205 KIIDYLVEEFKKENGIDLSQDKMALQRLKDAAEKAKKDLSGVTQTQISLPFITAGAAGPLHLEVSLTRAKFDDLTRDLVERTKVPVRR 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STRGC (Chaperone protein dnaK OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=dnaK PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.150e-26
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  S + +V+LVGGSTRIP V + ++    GKE  KS+NPDE           +++G+    V+D             ET GGV T LI RNTTIPT K QVFST
Sbjct:  296 DAGLSLSEIDEVILVGGSTRIPAVVEAVKAE-TGKEPNKSVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFST 398          

HSP 2 Score: 60.8474 bits (146), Expect = 8.150e-26
Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++++H V EFK++N  D+S +  AL+RL+ A E+AK+ LS    T I +  +  G    +    T+TRA+F++L  DL  +   PV +
Sbjct:  205 KIIDHMVAEFKKENGIDLSTDKMALQRLKDAAEKAKKDLSGVTSTQISLPFITAGAAGPLHLEMTLTRAKFDDLTRDLVERTKTPVRQ 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STACT (Chaperone protein dnaK OS=Staphylococcus carnosus (strain TM300) GN=dnaK PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.150e-26
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  + + +V+LVGGSTRIP VQ+ ++    GKE  KS+NPDE           ++SG+    V+D             E  GG M  LI RNTTIPT K QV+ST
Sbjct:  296 DAGLSSNDIDEVILVGGSTRIPAVQEAVKKEV-GKEPNKSVNPDEVVAMGAAIQGGVISGD----VKDVVLLDVTPLSLGIEIMGGRMNTLIERNTTIPTSKSQVYST 398          

HSP 2 Score: 62.7734 bits (151), Expect = 8.150e-26
Identity = 32/87 (36.78%), Postives = 56/87 (64.37%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++++ V+EFK++N  D+S +  AL+RL+ A E+AK+ LS  +QT I +  +  G    +    T+TR++FEEL+ +L R+ M P  +
Sbjct:  206 IIDYLVEEFKKENGIDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGESGPLHLEITLTRSKFEELSDELVRRTMGPTRQ 292          
The following BLAST results are available for this feature:
BLAST of CB417297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK1_PHOPR8.144e-2643.52Chaperone protein dnaK 1 OS=Photobacterium profund... [more]
DNAK_SHELP8.144e-2642.59Chaperone protein dnaK OS=Shewanella loihica (stra... [more]
DNAK_RHOS58.145e-2645.87Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_LEUMM8.149e-2643.12Chaperone protein dnaK OS=Leuconostoc mesenteroide... [more]
DNAK_STRTD8.150e-2644.44Chaperone protein dnaK OS=Streptococcus thermophil... [more]
DNAK_STRT28.150e-2644.44Chaperone protein dnaK OS=Streptococcus thermophil... [more]
DNAK_STRT18.150e-2644.44Chaperone protein dnaK OS=Streptococcus thermophil... [more]
DNAK_STRU08.150e-2642.86Chaperone protein dnaK OS=Streptococcus uberis (st... [more]
DNAK_STRGC8.150e-2643.52Chaperone protein dnaK OS=Streptococcus gordonii (... [more]
DNAK_STACT8.150e-2641.67Chaperone protein dnaK OS=Staphylococcus carnosus ... [more]

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Properties
Property NameValue
Genbank descriptionEST0370 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P015 similar to 70 kDa heat shock protein (acc# AAL24367), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417297 ID=CB417297; Name=CB417297; organism=Citrus sinensis; type=EST; length=590bp
ACAGAATGGTGAACCACTTTGTTCAAGAGTTCAAGAGGAAAAACAAGAAG
GATATTAGTGGAAACCCCAGAGCGTTGAGGAGGTTGAGAACTGCCTGTGA
AAGGGCTAAGAGGACCCTGTCATCAACCGCACAGACTACAATTGAGATTG
ATTCTTTATATGAGGGTATTGATTTCTACACAACCATTACAAGGGCTAGA
TTCGAAGAGTTGAACATGGATTTGTTCAGGAAGTGTATGGAGCCAGTGGA
GAAATGCGAGAGATGCTAAGATGGACAAGAGCAGTGTCCATGATGTGGTT
CTTGTTGGTGGGTCTACTAGGATCCCAAAAGTCCAGCAACTGTTGCAGGA
CTTCTTCAATGGAAAAGAGCTATGCAAGAGCATCAACCCTGATGAAGCGG
TTGCCTACGGTGCTGCTGTGCAGGCTGCAATCTTGAGTGGTGAGGGTAAT
GAGAAGGTTCAGGACCTCTTATTGCTTGACGTCACCCCTCTATCGCTGGG
TTTGGAGACTGCTGGTGGAGTCATGACTGTGTTGATTCCAAGGAACACCA
CTATTCCAACCAAGAAGGAGCAGGTGTTCTCCACATACTC
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