CB417301
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 5.250e-33 Identity = 64/119 (53.78%), Postives = 84/119 (70.59%), Query Frame = 1 Query: 1 TALFNNGLSCGSCYEMKCENDSKWCLPGS--IIVTATNFCPPNLALSNDNGG--WCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345 T LF +G CG+CY+M+C + C GS I VTATN CPPN A D GG WCNPP HFD+++PAF+++A +RAGIVP+ +RR+PCA+ GG+RF + G+ Y+ L V NV GAGD Sbjct: 77 TTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGD 194
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.169e-32 Identity = 59/115 (51.30%), Postives = 86/115 (74.78%), Query Frame = 1 Query: 7 LFNNGLSCGSCYEMKCENDSKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345 LFN G SCG+C E++C N +WCL GS ++VTAT+FCPPN LS+D GGWCN P +H +++ AF IA+ RA ++PI +RR+ C ++GG+RF+++G S+F VL++NVG G+ Sbjct: 72 LFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGE 186
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 2.881e-31 Identity = 60/114 (52.63%), Postives = 81/114 (71.05%), Query Frame = 1 Query: 7 LFNNGLSCGSCYEMKCENDSKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345 LF G CG+C+E++C +D +WC+PG SII+TATNFC PN D GG CNPP +HF + AF +IA ++AG +P+ +RRI C K+G +RFTV+G F VL+TNV G+GD Sbjct: 82 LFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGD 195
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 8.381e-31 Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 1 Query: 7 LFNNGLSCGSCYEMKCE--NDSKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQY-RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342 LF +G SCG CY+++C+ D KWCL G+ + VTATNFCP +N+N GWCN P HFDM+ PAF +IA+ GIVP+ +RR+ C ++GG+RFT+ G FN+V+++NVGG G Sbjct: 69 LFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCP-----TNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGG 179
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3) HSP 1 Score: 127.102 bits (318), Expect = 2.696e-29 Identity = 58/115 (50.43%), Postives = 79/115 (68.70%), Query Frame = 1 Query: 1 TALFNNGLSCGSCYEMKCENDSKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345 TALFN+G SCG+CYE+ C + + CL GSI +TAT+ CPP A WC P +HFD++ P F++IAQ +A +VP+ +RR+PCAK GG++F V G+ +L NVGGAGD Sbjct: 86 TALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGD 193
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 2.696e-29 Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = 1 Query: 1 TALFNNGLSCGSCYEMKCENDSK--WCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342 T LFN+G SCG CY + C+ WC G +I VT TN+CPPN L GGWCN HFDM++PA+ I Y AGI+PI ++++ C + GG+RFT+NG +YF LVLVTN+ G+G Sbjct: 63 TPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSG 177
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 1.025e-28 Identity = 62/117 (52.99%), Postives = 77/117 (65.81%), Query Frame = 1 Query: 1 TALFNNGLSCGSCYEMKCENDS--KWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342 T LFNNG SCG CY + C D C G+ I VT TNFCPPN L GGWCN HFDM++PA+ I Y AGIVPI ++++ C + GG+RFT+ G +YF LVLVTN+ G+G Sbjct: 63 TPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSG 177
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.296e-23 Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 1 Query: 1 TALFNNGLSCGSCYEMKCENDSK--WCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342 T LFN+G SCG CY + C+ WC G +I VT TN+ GGWCN +FDM++PA+ I Y AGIVPI ++++ C + GG+RF +NG +YF LVLVTN+ G+G Sbjct: 63 TPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSG 168
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.432e-23 Identity = 50/114 (43.86%), Postives = 77/114 (67.54%), Query Frame = 1 Query: 4 ALFNNGLSCGSCYEMKCENDSKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345 ALF+NG CG+CYE+K ++ +++VTATN PP + N G +HFD+ PAFL IA+ + G+VP+S+R++ C ++GGI++T+ G+ +N+V+V NVGGAGD Sbjct: 122 ALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPV---NGMKG------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGD 220
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2) HSP 1 Score: 65.4698 bits (158), Expect = 9.634e-11 Identity = 41/123 (33.33%), Postives = 59/123 (47.97%), Query Frame = 1 Query: 4 ALFNNGLSCGSCYEMKCENDSKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKGGIRFTVNGHS--YFNLVLVTNVGGAGD 345 +LF NG CGSCY++KC ++ C + V T+ CP GG C HFDM+ AF +A AG++ I ++R+PC + F V+ S Y+ +LV G GD Sbjct: 87 SLFKNGKGCGSCYQIKC-TGNRACSGRPVTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGD 199 The following BLAST results are available for this feature:
BLAST of CB417301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB417301 ID=CB417301; Name=CB417301; organism=Citrus sinensis; type=EST; length=346bpback to top |