CB417302

Overview
NameCB417302
Unique NameCB417302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3579 contig Csv1_Contig3579:158..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  203 EASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWH-RVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 544
            +A A   T  D KE P ++VF  D+PGL+          D  L ISG+R  E E+K    + R+ER  G   R+F LPENA  ++I A  ++GVLTVTV      +    R I++
Sbjct:   38 DAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPKKPRTIEV 152          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 2
Query:  203 EASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNI----EKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 544
            +A A   T  D K+ P A+ F  D+PGL+         ++R L ISG+R      E++++S  + R+ER  G F R+F LP+NA +D+I A  ++GVLTVTV K    +    + I++
Sbjct:   46 DARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEV 163          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = 2
Query:  206 ASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISG---QRNIEKE---DKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQIS 547
            ASA     +DW ETP +HV + ++PGL          D   L + G       EKE   +K   WH  ER    F+R   LP   ++++I+AS++NGVLTV VPK     +   R I +S
Sbjct:   24 ASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVVPKEPAPARPRTRPIAVS 143          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  203 EASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 544
            +A A   T  D KE   A+ F  D+PGL          D+R L ISG+R  E+ + +  + R+ER  G F R+F LP+NA +D++ A   +GVLTVTV K    +    + I+I
Sbjct:   39 DARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREEREDAK-YLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEI 151          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 44/116 (37.93%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  230 VDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQI--------------SGQRNIEKEDKSD--TWHRVERSSGMFSR---RFRLPENAKMDRIKASMENGVLTVTVPKAEEAKK 520
            +DW+ETP AHVF+ DLPGL          D   L++              +G+ + E+E+++D   WH  ER++G       +FRLPE+A  D   A M +GVLTVTVPK +  K+
Sbjct:   29 MDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVTVPKRKGKKR 144          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSPC2_RICFE (Small heat shock protein C2 OS=Rickettsia felis GN=hspC2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 38/108 (35.19%), Postives = 54/108 (50.00%), Query Frame = 2
Query:  227 RVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            R D  ET   +  + +LPG+          D+  L I GQ+  + E+K+  +H  ER  G F R   LP N   D I A  ENG+L +T+PK E+ K    R I++ G
Sbjct:   51 RTDISETDSGYSLEVELPGINQKDIDINI-DNHILTIKGQKEEKSEEKNKNYHMRERYYGSFQRSISLPANINDDAINARFENGILHITIPKKEQGK---TRKIEVKG 154          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 46/122 (37.70%), Postives = 62/122 (50.82%), Query Frame = 2
Query:  212 AFVNTRVDWKE--TPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSD-----TWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPK--AEEAKKANVRAIQISG 550
            A  NT +D KE     A V   D+PG+          D   L ISG+R     D  D      + R+ER  G F RRF LPE+A +D ++A  ++GVLTVTV K    E KK  V  ++++G
Sbjct:   45 AMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPKKPRVVEVKVAG 166          
The following BLAST results are available for this feature:
BLAST of CB417302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
HSP21_IPONI1.490e-1338.2617.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP18_ORYSJ1.490e-1336.4418.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP16_ORYSJ2.542e-1335.8316.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HSP23_MAIZE7.397e-1337.7217.0 kDa class II heat shock protein OS=Zea mays G... [more]
HS178_ORYSJ3.671e-1237.9317.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSPC2_RICFE4.059e-1135.19Small heat shock protein C2 OS=Rickettsia felis GN... [more]
HSP19_ORYSJ9.042e-1137.7019.0 kDa class II heat shock protein OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionEST0377 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P022 similar to small heat shock protein (acc# 1107298A), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417302 ID=CB417302; Name=CB417302; organism=Citrus sinensis; type=EST; length=730bp
ACTTTTTATTAGTCGATAGAGGAAAGAGAGAGGGAAAACAAAAAAAGGAA
AGATAAGGAAAATGTCGCTGATTCCAAGCTTCTTCGGCAACCGACGCAGC
AGTGTGTTCGATCCGTTCTCACTCGACGTTTGGGATCCATTCAGGGACTT
CCCTCTCTCTGCTTCTTCTTTTCCATCTGCGGTGTCCTCTCAGTTCCCTG
GAGAAGCCTCTGCTTTCGTTAATACCCGCGTGGACTGGAAGGAAACCCCA
GAGGCCCACGTGTTCAAGGCTGATCTTCCGGGGCTAAGGAAAGAGGAGGT
GAAGGTCGAGGTTGAGGATGACAGGGCGCTTCAGATAAGCGGGCAGAGGA
ACATTGAGAAGGAAGACAAGAGCGACACGTGGCATCGCGTGGAGCGTAGC
AGTGGCATGTTCTCGAGGAGGTTCAGGCTGCCGGAGAATGCGAAGATGGA
CCGCATTAAGGCTTCAATGGAGAACGGTGTGCTTACTGTTACCGTTCCTA
AAGCGGAGGAGGCCAAGAAAGCTAATGTCAGGGCTATTCAAATCTCTGGC
TGACTAATTAATAAACAAAGACAATAAATAATTGTATGATAAGTTTTATG
GTTTGGTTTGGTCTATGTATCATGTGAAGTCTGTCTTTGTCTACTGAGAT
CGAGTGTCTTTGTTTGTAATGGGAATGTCAGAATGGGAATAATAATGTAA
TTTCGTAAAAAAAAAAAAAAAAAAAAAAAA
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