CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig376 contig Csv1_Contig376:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYAM_MOUSE (Probable alanyl-tRNA synthetase, mitochondrial OS=Mus musculus GN=Aars2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.290e-39
Identity = 73/117 (62.39%), Postives = 90/117 (76.92%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSF-GDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASR 347
            KPIFLGT DP ++++   R  N+QKC+RAGG+HNDL+DVG+D  HHTFFEMLGNW+F G+YFK EA    WELLT+VY +P DRL+ +YF GD + GL PD E RDIWL   +PASR
Sbjct:   78 KPIFLGTVDPRSEMAGFRRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSLGVPASR 194          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYAM_HUMAN (Probable alanyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=AARS2 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.874e-39
Identity = 74/117 (63.25%), Postives = 90/117 (76.92%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSF-GDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASR 347
            KPIFLGT DP ++++   R  N+QKC+RAGG HNDL+DVG+D  HHTFFEMLGNW+F G+YFK EA    WELLT+VY +P +RL+ +YF GD KAGL PD E RDIWL   +PASR
Sbjct:   83 KPIFLGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEERLWISYFDGDPKAGLDPDLETRDIWLSLGVPASR 199          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CYTH3 (Alanyl-tRNA synthetase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=alaS PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.625e-36
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            K  FLG   P     K  R  +TQKC+R  GKHNDL++VG DTYHHT FEMLGNWSFGDYFK EAI W+WELLT VY+LP DRLY T F GD+K  LA D EA + W K++   R
Sbjct:   46 KDYFLGNETP-----KYRRIADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKEEAIAWSWELLTSVYKLPKDRLYVTIFEGDDKEKLARDTEAYNFWKKWIAEDR 155          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_SALRD (Alanyl-tRNA synthetase OS=Salinibacter ruber (strain DSM 13855) GN=alaS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.099e-34
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLP 338
            K +FLGT          +RA +TQKC+R  GKHNDL++VG DTYHHTFFEMLGNWSFGDYFK EAI W WELL + + L  DRLYAT   GD+  GL+ D EA D+WL   P
Sbjct:   63 KDVFLGTGQ-----RPYSRAVDTQKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKAEAIRWAWELLVERWGLAPDRLYATVHEGDDDFGLSADAEAYDLWLSETP 169          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_PORGI (Alanyl-tRNA synthetase OS=Porphyromonas gingivalis GN=alaS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.058e-33
Identity = 67/115 (58.26%), Postives = 77/115 (66.96%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            K I LG  +     +K TR  ++QKC+R  GKHNDL++VG DTYHHT FEMLGNWSFGDYFK EAIEW WE L  V  L   RLYAT F G+ + GL  DNEA   W +FLP  R
Sbjct:   47 KDIILGNTE-----AKYTRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGLDPQRLYATVFEGNPEEGLDRDNEAASYWAQFLPEER 156          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_OPITP (Alanyl-tRNA synthetase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=alaS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.250e-33
Identity = 69/114 (60.53%), Postives = 80/114 (70.18%), Query Frame = 3
Query:    6 PIFLGTADPNTQL------SKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAP--DNEARDIW 323
            PIFLG   P+         +K TRA +TQKCIRAGGKHNDL+DVG DTYHHT FEMLGNWSFGDYFK E+I W WEL+TKV+ +PA RL+AT +  D+        D EA DIW
Sbjct:   46 PIFLGDRAPDVSKWAGARPAKDTRAADTQKCIRAGGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKESITWGWELITKVWGIPAKRLFATVYSPDKSKNDPSDFDQEAYDIW 159          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_PELLD (Alanyl-tRNA synthetase OS=Pelodictyon luteolum (strain DSM 273) GN=alaS PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.169e-32
Identity = 59/78 (75.64%), Postives = 70/78 (89.74%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            TRA +TQKCIRA GKHNDL+DVG+DTYHHTFFEMLGNWSFGDY+K EAI W WELLT+V++LPADRLYAT +  D+++
Sbjct:   58 TRAADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAISWAWELLTEVWKLPADRLYATVYHDDDES 135          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_GRAFK (Alanyl-tRNA synthetase OS=Gramella forsetii (strain KT0803) GN=alaS PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.527e-32
Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYF-GGDEKAGLAPDNEARDIWLKFLPASR 347
            K  FLG +     ++K  R  +TQKC+R  GKHNDL++VG DTYHHT FEMLGNWSFGDYFK EAI W WELLT+VY++  + LY + F G D++  L  D EA ++W K +P  R
Sbjct:   46 KEFFLGNS-----VAKSNRVTDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAISWAWELLTEVYKISPENLYVSVFEGSDDRDDLGLDTEALELWKKIVPEER 156          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_FLAPJ (Alanyl-tRNA synthetase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=alaS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.403e-32
Identity = 64/115 (55.65%), Postives = 75/115 (65.22%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            K  FLG   P     K  R  +TQKC+R  GKHNDL+DVG DTYHHT FEMLGNWSFGDYFK EAI W WELLT+VY++P   LY + F G ++  +  D EA DIW   +   R
Sbjct:   46 KEYFLGNGTP-----KSPRIADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIPKQNLYVSVFEGSKEDNVPFDQEAWDIWKGLIDEDR 155          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_FLAJ1 (Alanyl-tRNA synthetase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=alaS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.403e-32
Identity = 63/115 (54.78%), Postives = 76/115 (66.09%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            K  FLG   P     K  R  +TQKC+R  GKHNDL++VG DTYHHT FEMLGNWSFGDYFK EAI W WELLT+VY++P + LY + F G ++  +  D EA DIW   +   R
Sbjct:   46 KEFFLGNGTP-----KSPRIADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIPKENLYVSVFEGSKEDNVPFDQEAWDIWKTLIDEDR 155          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYAM_MOUSE1.290e-3962.39Probable alanyl-tRNA synthetase, mitochondrial OS=... [more]
SYAM_HUMAN2.874e-3963.25Probable alanyl-tRNA synthetase, mitochondrial OS=... [more]
SYA_CYTH36.625e-3660.87Alanyl-tRNA synthetase OS=Cytophaga hutchinsonii (... [more]
SYA_SALRD8.099e-3459.82Alanyl-tRNA synthetase OS=Salinibacter ruber (stra... [more]
SYA_PORGI1.058e-3358.26Alanyl-tRNA synthetase OS=Porphyromonas gingivalis... [more]
SYA_OPITP5.250e-3360.53Alanyl-tRNA synthetase OS=Opitutus terrae (strain ... [more]
SYA_PELLD1.169e-3275.64Alanyl-tRNA synthetase OS=Pelodictyon luteolum (st... [more]
SYA_GRAFK1.527e-3254.31Alanyl-tRNA synthetase OS=Gramella forsetii (strai... [more]
SYA_FLAPJ3.403e-3255.65Alanyl-tRNA synthetase OS=Flavobacterium psychroph... [more]
SYA_FLAJ13.403e-3254.78Alanyl-tRNA synthetase OS=Flavobacterium johnsonia... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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