CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_POLSQ (Alanyl-tRNA synthetase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.362e-25
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG           TRA   QKCIRAGGKHNDLD+VG    HHTFFEMLGN+SFGDYFK +AI++ W+LLT+V+ LP D+L  T +  D++A
Sbjct:   46 KDVFLGF-----DKRSYTRATTAQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIQFAWDLLTQVFELPKDKLLVTVYAEDDEA 135          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_IDILO (Alanyl-tRNA synthetase OS=Idiomarina loihiensis GN=alaS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.362e-25
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT        +  +A + Q+C+RAGGKHNDL++VG    HHTFFEM+GN+SFGDYFK +AI++ W+ LTK  +LPA++L+ T F          D+EA DIW+K
Sbjct:   48 KDVFLGT-----DKRRYDKATSAQRCLRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKQAIQYAWDFLTKELKLPAEKLWVTVF--------TEDDEAYDIWVK 143          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_FRATN (Alanyl-tRNA synthetase OS=Francisella tularensis subsp. novicida (strain U112) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.362e-25
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 335
            K +FLG      +    +RA   QKC+RAGGKHNDLD+VG    HHTFFEMLGN+SFGDYFK +AI + WE LTK  +LP ++L+ T +        A D+EA D+W K +
Sbjct:   47 KDVFLGI-----EKKDFSRAVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKLPIEKLWVTIY--------ASDDEAFDVWHKHI 144          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BURCM (Alanyl-tRNA synthetase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.362e-25
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT DP       +RA   Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK++AI + WELLT VY+LP ++L+ T +          D+EA DIW K
Sbjct:   46 KDVFLGT-DPRPY----SRATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKEKLWVTVY--------QEDDEAYDIWAK 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BURCA (Alanyl-tRNA synthetase OS=Burkholderia cenocepacia (strain AU 1054) GN=alaS PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.362e-25
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT DP       +RA   Q+ +RAGGKHNDL++VG    HH FFEMLGN+SFGDYFK++AI++ WELLT VY+LP D+L+ T +          D+EA DIW K
Sbjct:   46 KDVFLGT-DPRPY----SRATTAQRSVRAGGKHNDLENVGYTARHHAFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKDKLWVTVY--------QEDDEAYDIWAK 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BURA4 (Alanyl-tRNA synthetase OS=Burkholderia ambifaria (strain MC40-6) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.362e-25
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT DP       +RA   Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK++AI + WELLT VY+LP ++L+ T +          D+EA DIW K
Sbjct:   46 KDVFLGT-DPRPY----SRATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKEKLWVTVY--------QEDDEAYDIWAK 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XYLFM (Alanyl-tRNA synthetase OS=Xylella fastidiosa (strain M12) GN=alaS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG A+  +++    R  + Q C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK EAI W WELLT V+ LP +RL  T +  D+++
Sbjct:   52 KDVFLG-AEKRSEV----RVADVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPPERLLVTVYRTDDES 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XYLFA (Alanyl-tRNA synthetase OS=Xylella fastidiosa GN=alaS PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG A+  +++    R  + Q C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK EAI W WELLT V+ LP +RL  T +  D+++
Sbjct:   52 KDVFLG-AEKRSEV----RVADVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPPERLLVTVYHTDDES 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_SILPO (Alanyl-tRNA synthetase OS=Silicibacter pomeroyi GN=alaS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASR 347
            RA   QKC+RAGGKHNDLD+VG    HHTFFEMLGN+SFGDYFK+EAI + WEL+T+ + +P DRLY T +          D+EA +IW K  +P SR
Sbjct:   60 RATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELITRDFDIPKDRLYTTVY--------HTDDEAFEIWKKVGVPESR 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_SOLUE (Alanyl-tRNA synthetase OS=Solibacter usitatus (strain Ellin6076) GN=alaS PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.029e-25
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 347
            K +FLG      +     RA ++QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI + W+L+TK Y LP ++LY T F          D+EA ++W K   +P SR
Sbjct:   46 KDVFLGQ-----EKRDYVRAASSQKCVRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKADAIAYAWDLITKDYGLPKEKLYVTVF--------REDDEAEELWQKVTGIPKSR 149          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_POLSQ2.362e-2556.84Alanyl-tRNA synthetase OS=Polynucleobacter sp. (st... [more]
SYA_IDILO2.362e-2549.54Alanyl-tRNA synthetase OS=Idiomarina loihiensis GN... [more]
SYA_FRATN2.362e-2550.45Alanyl-tRNA synthetase OS=Francisella tularensis s... [more]
SYA_BURCM2.362e-2553.21Alanyl-tRNA synthetase OS=Burkholderia ambifaria (... [more]
SYA_BURCA2.362e-2553.21Alanyl-tRNA synthetase OS=Burkholderia cenocepacia... [more]
SYA_BURA42.362e-2553.21Alanyl-tRNA synthetase OS=Burkholderia ambifaria (... [more]
SYA_XYLFM3.085e-2556.84Alanyl-tRNA synthetase OS=Xylella fastidiosa (stra... [more]
SYA_XYLFA3.085e-2556.84Alanyl-tRNA synthetase OS=Xylella fastidiosa GN=al... [more]
SYA_SILPO3.085e-2557.14Alanyl-tRNA synthetase OS=Silicibacter pomeroyi GN... [more]
SYA_SOLUE4.029e-2549.57Alanyl-tRNA synthetase OS=Solibacter usitatus (str... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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