CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_SILST (Alanyl-tRNA synthetase OS=Silicibacter sp. (strain TM1040) GN=alaS PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 8.975e-25
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            RA   QKC+RAGGKHNDLD+VG    HHTFFEMLGN+SFGDYFKNEAI + WEL+T  + +P D+LY T +          D+EA +IW K
Sbjct:   60 RATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDIPKDKLYTTVY--------HTDDEAFEIWKK 142          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_HELMI (Alanyl-tRNA synthetase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=alaS PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.975e-25
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG      +     RA  +QKC+RAGGKHNDLD VG+   HHTFFEMLGN+SFGDYFK +AI + WE LT V  LP D+LYAT +  D++A
Sbjct:   48 KDVFLGF-----EKRPYLRATTSQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRYAWEFLTDVCGLPKDKLYATVYLDDDEA 137          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BORA1 (Alanyl-tRNA synthetase OS=Bordetella avium (strain 197N) GN=alaS PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.975e-25
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            TRA ++Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI + WELLT VY+LP ++L+ T +          D+EA DIW K
Sbjct:   58 TRATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWELLTTVYKLPVEKLWVTVY--------QEDDEAYDIWAK 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_ACIBL (Alanyl-tRNA synthetase OS=Acidobacteria bacterium (strain Ellin345) GN=alaS PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.975e-25
Identity = 57/110 (51.82%), Postives = 73/110 (66.36%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKV--YRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            K +FLG      +     RA  +QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI + WEL+T    Y +  D+LYAT F G+   G+  D+EA  +WL
Sbjct:   60 KDVFLGV-----EKRDYNRATTSQKCVRAGGKHNDLENVGFTNRHHTFFEMLGNFSFGDYFKKDAIAYAWELVTSPDWYGMQQDKLYATIFKGEN--GVPRDDEAYQLWL 162          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_HERA2 (Alanyl-tRNA synthetase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=alaS PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.172e-24
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            +RA ++QKC+R  GK NDL++VG    HHTFFEMLGN+SFGDYFK +AI + WE LT+   L   R++ + + GDE+  +  D EA D+WL ++PA R
Sbjct:   58 SRAVSSQKCLRISGKQNDLENVGPSPRHHTFFEMLGNFSFGDYFKKDAIRFAWEFLTQEIGLDPKRMWVSIYEGDEQ--IPADEEAHDLWLAYMPAER 153          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_VIBHB (Alanyl-tRNA synthetase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=alaS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.531e-24
Identity = 56/100 (56.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            TRA   Q+C+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI + WE LT+  +LPADRL  T +          D+EA DIW K   +PA R
Sbjct:   60 TRATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPADRLLVTVY--------ETDDEAFDIWNKKVGVPADR 151          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_VIBF1 (Alanyl-tRNA synthetase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=alaS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.531e-24
Identity = 60/117 (51.28%), Postives = 74/117 (63.25%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            K  FLG+   N      TRA   Q+C+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI++ WE LT+   LPADRL  T +          D+EA +IW K   +PA R
Sbjct:   48 KDCFLGSEKRN-----YTRATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELPADRLLVTVY--------ETDDEAFEIWNKEMGIPADR 151          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_THIDA (Alanyl-tRNA synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=alaS PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.531e-24
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            +RA ++Q+C+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI++ WE LT V +LP+++L+ T +        A D+EA DIW
Sbjct:   58 SRAVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKLPSEKLWVTVY--------AEDDEAYDIW 139          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_RHOPS (Alanyl-tRNA synthetase OS=Rhodopseudomonas palustris (strain BisB5) GN=alaS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.531e-24
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 347
            RA  +QKC+RAGGKHNDLD+VG    HHTFFEMLGN+SFGDYFK+ AIE  W L+TK Y LP DRL  T +        + D+EA  +W K   LP S+
Sbjct:   60 RATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEYGLPKDRLLVTVY--------SEDDEAFGLWKKIAGLPESK 150          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_GEOSL (Alanyl-tRNA synthetase OS=Geobacter sulfurreducens GN=alaS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.531e-24
Identity = 53/89 (59.55%), Postives = 63/89 (70.79%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            RA ++QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFGDYFK EAI + WE LTK   L  DRLY T +          D+EA DIW
Sbjct:   59 RACSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLDKDRLYVTVY--------TDDDEAADIW 139          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_SILST8.975e-2558.24Alanyl-tRNA synthetase OS=Silicibacter sp. (strain... [more]
SYA_HELMI8.975e-2556.84Alanyl-tRNA synthetase OS=Heliobacterium modestica... [more]
SYA_BORA18.975e-2556.52Alanyl-tRNA synthetase OS=Bordetella avium (strain... [more]
SYA_ACIBL8.975e-2551.82Alanyl-tRNA synthetase OS=Acidobacteria bacterium ... [more]
SYA_HERA21.172e-2451.02Alanyl-tRNA synthetase OS=Herpetosiphon aurantiacu... [more]
SYA_VIBHB1.531e-2456.00Alanyl-tRNA synthetase OS=Vibrio harveyi (strain A... [more]
SYA_VIBF11.531e-2451.28Alanyl-tRNA synthetase OS=Vibrio fischeri (strain ... [more]
SYA_THIDA1.531e-2455.56Alanyl-tRNA synthetase OS=Thiobacillus denitrifica... [more]
SYA_RHOPS1.531e-2456.57Alanyl-tRNA synthetase OS=Rhodopseudomonas palustr... [more]
SYA_GEOSL1.531e-2459.55Alanyl-tRNA synthetase OS=Geobacter sulfurreducens... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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