CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_SULSY (Alanyl-tRNA synthetase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=alaS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.096e-20
Identity = 51/111 (45.95%), Postives = 66/111 (59.46%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 335
            K +FLG  +         RA + QK  R  GKHNDL++VG    HHTFFEMLGN+SFGDYFK EAIE+ WE LT+   +P ++L  + F          D+EA +IW K +
Sbjct:   49 KNVFLGLEE-----RPYKRAASCQKVFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTEHLEIPKEKLLVSVF--------EEDDEAFEIWNKHI 146          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_EHRRW (Alanyl-tRNA synthetase OS=Ehrlichia ruminantium (strain Welgevonden) GN=alaS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.096e-20
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   51 LTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            +  A ++QKC+R GGKHNDL++VG    HHTFFEMLGN+SFG YFK  AIE  W+ +TK   L   RLY T +  D+ A
Sbjct:   61 INTAVSSQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKERAIELAWDFVTKELALDKKRLYITVYHDDQDA 139          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CLONN (Alanyl-tRNA synthetase OS=Clostridium novyi (strain NT) GN=alaS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.096e-20
Identity = 50/107 (46.73%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KP F G   P  +     R    QKCIR G    D+++VGK + H TFFEM+GN+SFGDYFKNE I W WE  T+V +LP ++LY T +          D+EA DIW
Sbjct:   49 KPYFTGLQTPPRK-----RVTTCQKCIRTG----DIENVGKTSRHATFFEMMGNFSFGDYFKNEVIPWAWEFTTEVLKLPKEKLYVTIY--------LDDDEAYDIW 138          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_ANAVT (Alanyl-tRNA synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=alaS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.096e-20
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            KPIFLG   P     +  RA  +QKCIR     ND+++VG+   H TFFEMLGN+SFGDYFK +AI W WE+ T+V+ LP +RL  + F  D++A
Sbjct:   52 KPIFLGQRTP-----EFKRATTSQKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPKERLVVSVFEEDDEA 137          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_ANASP (Alanyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120) GN=alaS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.096e-20
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            KPIFLG   P     +  RA  +QKCIR     ND+++VG+   H TFFEMLGN+SFGDYFK +AI W WE+ T+V+ LP +RL  + F  D++A
Sbjct:   52 KPIFLGQRTP-----EFKRATTSQKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPKERLVVSVFEEDDEA 137          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_SYNPX (Alanyl-tRNA synthetase OS=Synechococcus sp. (strain WH8102) GN=alaS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.656e-20
Identity = 51/107 (47.66%), Postives = 64/107 (59.81%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KP+FLG      Q     RA ++QKCIR     ND+++VG+   HHTFFEMLGN+SFGDYFK +AIEW WEL T+VY +    L  + F          D+EA  IW
Sbjct:   59 KPVFLGQ-----QQRPAPRATSSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTQVYGIDPRNLVVSVF--------REDDEAEQIW 148          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_RHILO (Alanyl-tRNA synthetase OS=Rhizobium loti GN=alaS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.656e-20
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            +RA   QK +RAGGKHNDLD+VG    H TFFEMLGN+SFGDYFK  AIE  W L+TK + L  D+L  T +  D++A
Sbjct:   59 SRATTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEFGLKKDKLLVTVYHTDDEA 136          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_PROMM (Alanyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=alaS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.656e-20
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            KP+F+G A+         RA ++QKCIR     ND+++VG+   HHTFFEMLGN+SFGDYFK +AIEW WEL T+V+ L    L  + F  D++A
Sbjct:   59 KPVFMGQAE-----RPAPRATSSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELTTEVFGLDPKNLVVSVFREDDEA 144          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_HELPY (Alanyl-tRNA synthetase OS=Helicobacter pylori GN=alaS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.656e-20
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   51 LTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            + RA ++Q C+RAGGKHNDL++VG    HHT FEMLGN+SFGDYFK EAI + WE +TK        LY +     EK     D+EA  +W KF+P  R
Sbjct:   54 IPRAASSQLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDLYISV---HEK-----DDEAVKLWEKFVPVDR 144          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_HELPS (Alanyl-tRNA synthetase OS=Helicobacter pylori (strain Shi470) GN=alaS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.656e-20
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 3
Query:   51 LTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            + RA ++Q C+RAGGKHNDL++VG    HHT FEMLGN+SFGDYFK EAI + WE +TK     +  LY +     EK     D+EA  +W KF+P  R
Sbjct:   54 IPRATSSQLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKSKDLYISV---HEK-----DDEAVKLWEKFVPFER 144          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_SULSY5.096e-2045.95Alanyl-tRNA synthetase OS=Sulfurihydrogenibium sp.... [more]
SYA_EHRRW5.096e-2054.43Alanyl-tRNA synthetase OS=Ehrlichia ruminantium (s... [more]
SYA_CLONN5.096e-2046.73Alanyl-tRNA synthetase OS=Clostridium novyi (strai... [more]
SYA_ANAVT5.096e-2050.53Alanyl-tRNA synthetase OS=Anabaena variabilis (str... [more]
SYA_ANASP5.096e-2050.53Alanyl-tRNA synthetase OS=Anabaena sp. (strain PCC... [more]
SYA_SYNPX6.656e-2047.66Alanyl-tRNA synthetase OS=Synechococcus sp. (strai... [more]
SYA_RHILO6.656e-2057.69Alanyl-tRNA synthetase OS=Rhizobium loti GN=alaS P... [more]
SYA_PROMM6.656e-2049.47Alanyl-tRNA synthetase OS=Prochlorococcus marinus ... [more]
SYA_HELPY6.656e-2050.51Alanyl-tRNA synthetase OS=Helicobacter pylori GN=a... [more]
SYA_HELPS6.656e-2050.51Alanyl-tRNA synthetase OS=Helicobacter pylori (str... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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