CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_HELPJ (Alanyl-tRNA synthetase OS=Helicobacter pylori J99 GN=alaS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.656e-20
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   51 LTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            + RA ++Q C+RAGGKHNDL++VG    HHT FEMLGN+SFGDYFK EAI + WE +TK        LY +     EK     D+EA  +W KF+P  R
Sbjct:   54 IPRAASSQLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDLYISV---HEK-----DDEAVKLWEKFVPVDR 144          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_HELPH (Alanyl-tRNA synthetase OS=Helicobacter pylori (strain HPAG1) GN=alaS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.656e-20
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   51 LTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            + RA ++Q C+RAGGKHNDL++VG    HHT FEMLGN+SFGDYFK EAI + WE +TK        LY +     EK     D+EA  +W KF+P  R
Sbjct:   54 IPRATSSQLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDLYISV---HEK-----DDEAVKLWEKFVPVDR 144          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_HAEIN (Alanyl-tRNA synthetase OS=Haemophilus influenzae GN=alaS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.656e-20
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            K +FLG           +RA   Q+C+R GGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI + WE LT  +   LP ++L+ T +          D+EA +IW K   +PA R
Sbjct:   47 KDVFLGM-----DKRPYSRATTAQRCVRPGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWLGLPKEKLWVTVY--------ETDDEAYNIWNKDVGVPAER 152          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_FUSNN (Alanyl-tRNA synthetase OS=Fusobacterium nucleatum subsp. nucleatum GN=alaS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.693e-20
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            KP FLG  +     +   R    QKCIR     NDL++VG+   HHTFFEMLGN+SFG+YFK EAI+W+WE +T+V ++  D+L+ T F          D+EA  IW++
Sbjct:   46 KPYFLGQKE-----APCPRVTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGNYFKKEAIKWSWEFVTEVLKINKDKLWVTVF--------TTDDEAEKIWIE 137          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_DESHY (Alanyl-tRNA synthetase OS=Desulfitobacterium hafniense (strain Y51) GN=alaS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.693e-20
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            KP F+   +P        RA  +QKC+R      DL+ VGK   HHTFFEMLGN+SFGDYFK EAI W WE +T+V +LP D+L+ T    DE        EA+++W++
Sbjct:   47 KPYFMRKVEP-----PFPRATTSQKCVRTP----DLEVVGKTARHHTFFEMLGNFSFGDYFKAEAIPWAWEFVTEVLKLPIDQLWITVHPEDE--------EAKNLWIE 138          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CLOTE (Alanyl-tRNA synthetase OS=Clostridium tetani GN=alaS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.693e-20
Identity = 51/109 (46.79%), Postives = 62/109 (56.88%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            KP F G   P       +R    QKCIR G    D+++VGK + H TFFEMLGN+SFGDYFK E I W WE +TK   +P D+LY T +          D+EA DIW K
Sbjct:   49 KPYFTGVQTPPK-----SRVTTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKCEVIPWAWEFVTKSLNIPKDKLYVTIY--------LDDDEAYDIWTK 140          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CLOBL (Alanyl-tRNA synthetase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=alaS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.693e-20
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            KP F G   P  +     R    QKC+R G    D+++VGK + H TFFEM+GN+SFGDYFK E I W WE +T++ +LP D+LY T +          D+EA DIW+
Sbjct:   49 KPYFTGLQVPPNK-----RVTTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLPKDKLYVTIY--------EDDDEALDIWV 139          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CLOBK (Alanyl-tRNA synthetase OS=Clostridium botulinum (strain Okra / Type B1) GN=alaS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.693e-20
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            KP F G   P  +     R    QKC+R G    D+++VGK + H TFFEM+GN+SFGDYFK E I W WE +T++ +LP D+LY T +          D+EA DIW+
Sbjct:   49 KPYFTGLQVPPNK-----RVTTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLPKDKLYVTIY--------EDDDEALDIWV 139          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_WIGBR (Alanyl-tRNA synthetase OS=Wigglesworthia glossinidia brevipalpis GN=alaS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.135e-19
Identity = 52/111 (46.85%), Postives = 65/111 (58.56%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGD--------EKAGLAPDN 305
            K IFLG   P     K  R    Q+CIR GGKHNDL+ +GK   HHTFFEMLGN+SFG YFK++ I++ WELLT  K + L  ++L  T +  D        EK  + P N
Sbjct:   47 KDIFLGFKKP-----KYIRVATAQRCIRVGGKHNDLNMIGKTNRHHTFFEMLGNFSFGSYFKSDTIQFAWELLTSKKWFDLSKEKLIVTIYYKDIESYNLWVEKTNINPKN 152          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_PROM3 (Alanyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9303) GN=alaS PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.135e-19
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            KP+F+G A+         RA ++QKCIR     ND+++VG+   HHTFFEMLGN+SFGDYFK +AIEW WEL T+V+ L    L  + F  D++A
Sbjct:   59 KPVFMGQAE-----RPAPRATSSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLNPKNLVVSVFREDDEA 144          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_HELPJ6.656e-2050.51Alanyl-tRNA synthetase OS=Helicobacter pylori J99 ... [more]
SYA_HELPH6.656e-2050.51Alanyl-tRNA synthetase OS=Helicobacter pylori (str... [more]
SYA_HAEIN6.656e-2045.38Alanyl-tRNA synthetase OS=Haemophilus influenzae G... [more]
SYA_FUSNN8.693e-2044.95Alanyl-tRNA synthetase OS=Fusobacterium nucleatum ... [more]
SYA_DESHY8.693e-2045.87Alanyl-tRNA synthetase OS=Desulfitobacterium hafni... [more]
SYA_CLOTE8.693e-2046.79Alanyl-tRNA synthetase OS=Clostridium tetani GN=al... [more]
SYA_CLOBL8.693e-2044.44Alanyl-tRNA synthetase OS=Clostridium botulinum (s... [more]
SYA_CLOBK8.693e-2044.44Alanyl-tRNA synthetase OS=Clostridium botulinum (s... [more]
SYA_WIGBR1.135e-1946.85Alanyl-tRNA synthetase OS=Wigglesworthia glossinid... [more]
SYA_PROM31.135e-1949.47Alanyl-tRNA synthetase OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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