CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CLOPS (Alanyl-tRNA synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=alaS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.529e-19
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KP F G  +P  +     R    QKCIR G    D+++VGK + H TFFEMLGN+SFGDYFK+E I W WE +T+   +P D+LY T +          D+EA DIW
Sbjct:   49 KPYFTGLEEPPKR-----RITTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDKLYVTIY--------LNDDEAYDIW 138          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CLOPE (Alanyl-tRNA synthetase OS=Clostridium perfringens GN=alaS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.529e-19
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KP F G  +P  +     R    QKCIR G    D+++VGK + H TFFEMLGN+SFGDYFK+E I W WE +T+   +P D+LY T +          D+EA DIW
Sbjct:   49 KPYFTGLEEPPKR-----RITTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDKLYVTIY--------LNDDEAYDIW 138          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CLOP1 (Alanyl-tRNA synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=alaS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.529e-19
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KP F G  +P  +     R    QKCIR G    D+++VGK + H TFFEMLGN+SFGDYFK+E I W WE +T+   +P D+LY T +          D+EA DIW
Sbjct:   49 KPYFTGLEEPPKR-----RITTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDKLYVTIY--------LNDDEAYDIW 138          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_EHRRG (Alanyl-tRNA synthetase OS=Ehrlichia ruminantium (strain Gardel) GN=alaS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.314e-19
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 3
Query:   51 LTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            +  A ++QKC+R GGKHNDL++VG    HHTFFEMLGN+SFG YFK  AIE  W  + K   L   RLY T +  D+ A
Sbjct:   61 INTAVSSQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKEHAIELAWNFVIKELALDRKRLYITVYHDDQDA 139          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CLOBM (Alanyl-tRNA synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=alaS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.314e-19
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            KP F G   P  +     R    QKC+R G    D+++VGK + H TFFEM+GN+SFGDYFK E I W WE  T+V +LP ++LY T +          D+EA DIW+
Sbjct:   49 KPYFTGLQVPPNK-----RVTTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKNKLYVTIY--------EDDDEALDIWV 139          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CLOBH (Alanyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=alaS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.314e-19
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            KP F G   P  +     R    QKC+R G    D+++VGK + H TFFEM+GN+SFGDYFK E I W WE  T+V +LP ++LY T +          D+EA DIW+
Sbjct:   49 KPYFTGLQVPPNK-----RVTTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKNKLYVTIY--------EDDDEALDIWV 139          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CLOB1 (Alanyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=alaS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.314e-19
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            KP F G   P  +     R    QKC+R G    D+++VGK + H TFFEM+GN+SFGDYFK E I W WE  T+V +LP ++LY T +          D+EA DIW+
Sbjct:   49 KPYFTGLQVPPNK-----RVTTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKNKLYVTIY--------EDDDEALDIWV 139          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_SYNS3 (Alanyl-tRNA synthetase OS=Synechococcus sp. (strain CC9311) GN=alaS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.635e-19
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KP+FLG      Q     RA ++QKCIR     ND+++VG+   HHTFFEMLGN+SFGDYFK +AIEW WEL T ++ +    L  + F          D+EA  IW
Sbjct:   59 KPVFLGQ-----QKRPAPRATSSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTDLFGIDPKHLVVSVF--------REDDEAEQIW 148          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_RUBXD (Alanyl-tRNA synthetase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=alaS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.635e-19
Identity = 53/108 (49.07%), Postives = 64/108 (59.26%), Query Frame = 3
Query:    6 PIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            P FLG   P        RA + QKC R      DL++VG D  H TFFEMLGN+SFGDYFK EAI W WE LT+   +P +RL+ T F GDE A    D EA+  W++
Sbjct:   50 PYFLGQEKPPHP-----RAASVQKCFRT----QDLEEVG-DPSHLTFFEMLGNFSFGDYFKKEAIGWAWEFLTEGLGIPPERLWVTIFEGDENA--PEDLEAKRFWME 145          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_PROM5 (Alanyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9515) GN=alaS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.635e-19
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KP+FLG  +  +      RA ++QKC+R     ND+++VG    HHTFFEMLGN+SFGDYFK EAI+W WEL+T +Y L  + +  + F          D+E+  IW
Sbjct:   54 KPVFLGLRNRPSP-----RASSSQKCLRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIQWAWELITDIYHLKPENIIISVF--------HEDHESEKIW 143          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_CLOPS2.529e-1945.79Alanyl-tRNA synthetase OS=Clostridium perfringens ... [more]
SYA_CLOPE2.529e-1945.79Alanyl-tRNA synthetase OS=Clostridium perfringens ... [more]
SYA_CLOP12.529e-1945.79Alanyl-tRNA synthetase OS=Clostridium perfringens ... [more]
SYA_EHRRG4.314e-1953.16Alanyl-tRNA synthetase OS=Ehrlichia ruminantium (s... [more]
SYA_CLOBM4.314e-1944.44Alanyl-tRNA synthetase OS=Clostridium botulinum (s... [more]
SYA_CLOBH4.314e-1944.44Alanyl-tRNA synthetase OS=Clostridium botulinum (s... [more]
SYA_CLOB14.314e-1944.44Alanyl-tRNA synthetase OS=Clostridium botulinum (s... [more]
SYA_SYNS35.635e-1945.79Alanyl-tRNA synthetase OS=Synechococcus sp. (strai... [more]
SYA_RUBXD5.635e-1949.07Alanyl-tRNA synthetase OS=Rubrobacter xylanophilus... [more]
SYA_PROM55.635e-1943.93Alanyl-tRNA synthetase OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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