CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_THEPX (Alanyl-tRNA synthetase OS=Thermoanaerobacter sp. (strain X514) GN=alaS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.813e-17
Identity = 51/117 (43.59%), Postives = 65/117 (55.56%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 347
            KP F G   P ++     R    Q+CIR      D++ VGK   H TFFEMLGN+SFGDYFK EAI W WE +T+V  LP +RL+ + +          D+EA +IW K   LP  R
Sbjct:   49 KPYFTGKETPPSK-----RVTTCQRCIRTP----DIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVNRLWVSIY--------EEDDEAFEIWNKIVGLPPER 148          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_THEP3 (Alanyl-tRNA synthetase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=alaS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.813e-17
Identity = 51/117 (43.59%), Postives = 65/117 (55.56%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 347
            KP F G   P ++     R    Q+CIR      D++ VGK   H TFFEMLGN+SFGDYFK EAI W WE +T+V  LP +RL+ + +          D+EA +IW K   LP  R
Sbjct:   49 KPYFTGKETPPSK-----RVTTCQRCIRTP----DIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVNRLWVSIY--------EEDDEAFEIWNKIVGLPPER 148          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_THET8 (Alanyl-tRNA synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=alaS PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.092e-17
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            KP FLG A P     +  R    Q+C+R G    D+++VG+ + H+T+FEMLGN+SFGDYFK EAI W WE LT+  +L   RL+ T F  D++A
Sbjct:   46 KPYFLG-AKPIFGGREWRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEHLKLDPGRLWVTVFEDDDEA 135          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_MYCGA (Alanyl-tRNA synthetase OS=Mycoplasma gallisepticum GN=alaS PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.888e-17
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            R  N+Q+CIRA    ND+++VG  + HHT FEMLGN+S GDYFK EAIE+ +ELLTK Y L  D+LY T +  D  A
Sbjct:   63 RLANSQRCIRA----NDIENVGVTSRHHTVFEMLGNFSIGDYFKKEAIEFGYELLTKFYGLNKDKLYITIYEDDNDA 135          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_FINM2 (Alanyl-tRNA synthetase OS=Finegoldia magna (strain ATCC 29328) GN=alaS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.888e-17
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:   48 KLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K  RA ++Q+CIR      D+D+VGK   H TFFEMLGN+SFGDYFK EAI W W+ LT    +P D L+ + +  DE+A
Sbjct:   59 KKDRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNELEVPKDILWVSVYEEDEEA 134          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_ONYPE (Alanyl-tRNA synthetase OS=Onion yellows phytoplasma GN=alaS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.175e-16
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 3
Query:   36 TQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGDE 281
            TQ     R  N QKCIR     ND+ +VGK + HHTFFEMLGN+S G+YFK EAI + +ELLT  K +  P ++LY TYF  D+
Sbjct:   52 TQTPPFRRITNVQKCIRT----NDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFAFPLEKLYITYFFQDQ 131          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_ARTAT (Alanyl-tRNA synthetase OS=Arthrobacter aurescens (strain TC1) GN=alaS PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.175e-16
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKV-----YRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            +RA + QKCIR G    D+++VGK   H TFF+M GN+SFGDYFK +AI++ +ELLT       Y LPA+RL+ T +          D+EA+++WLK   +PA R
Sbjct:   57 SRATSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAFELLTTSVDDGGYGLPAERLWVTVY--------EEDDEAKELWLKNTGIPAER 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_STRTD (Alanyl-tRNA synthetase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=alaS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.004e-16
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGDE 281
            R  N+QK IR     ND+++VGK   HHT FEMLGN+S GDYF++EAIEW +ELLT  + + LP D+LY TY+  D+
Sbjct:   62 RITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDLPKDKLYMTYYPDDK 134          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_STRT2 (Alanyl-tRNA synthetase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=alaS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.004e-16
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGDE 281
            R  N+QK IR     ND+++VGK   HHT FEMLGN+S GDYF++EAIEW +ELLT  + + LP D+LY TY+  D+
Sbjct:   62 RITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDLPKDKLYMTYYPDDK 134          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_STRT1 (Alanyl-tRNA synthetase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=alaS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.004e-16
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGDE 281
            R  N+QK IR     ND+++VGK   HHT FEMLGN+S GDYF++EAIEW +ELLT  + + LP D+LY TY+  D+
Sbjct:   62 RITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDLPKDKLYMTYYPDDK 134          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_THEPX1.813e-1743.59Alanyl-tRNA synthetase OS=Thermoanaerobacter sp. (... [more]
SYA_THEP31.813e-1743.59Alanyl-tRNA synthetase OS=Thermoanaerobacter pseud... [more]
SYA_THET83.092e-1747.37Alanyl-tRNA synthetase OS=Thermus thermophilus (st... [more]
SYA_MYCGA6.888e-1755.84Alanyl-tRNA synthetase OS=Mycoplasma gallisepticum... [more]
SYA_FINM26.888e-1751.25Alanyl-tRNA synthetase OS=Finegoldia magna (strain... [more]
SYA_ONYPE1.175e-1652.38Alanyl-tRNA synthetase OS=Onion yellows phytoplasm... [more]
SYA_ARTAT1.175e-1645.71Alanyl-tRNA synthetase OS=Arthrobacter aurescens (... [more]
SYA_STRTD2.004e-1654.55Alanyl-tRNA synthetase OS=Streptococcus thermophil... [more]
SYA_STRT22.004e-1654.55Alanyl-tRNA synthetase OS=Streptococcus thermophil... [more]
SYA_STRT12.004e-1654.55Alanyl-tRNA synthetase OS=Streptococcus thermophil... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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