CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig376 contig Csv1_Contig376:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_STRPI (Alanyl-tRNA synthetase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=alaS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGDE 281
            K  F GT  P        R  N QK IR     ND+++VGK   HHT FEMLGN+S GDYF++EAI W +ELLT  + +  PA++LY TY+  D+
Sbjct:   49 KKYFDGTIIPENP-----RITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDFPAEKLYMTYYPDDK 134          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_STRP2 (Alanyl-tRNA synthetase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=alaS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGDE 281
            K  F GT  P        R  N QK IR     ND+++VGK   HHT FEMLGN+S GDYF++EAI W +ELLT  + +  PA++LY TY+  D+
Sbjct:   49 KKYFDGTIIPENP-----RITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDFPAEKLYMTYYPDDK 134          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_STRGC (Alanyl-tRNA synthetase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=alaS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGDE 281
            K  F GT  P        R  N QK IR     ND+++VGK   HHT FEMLGN+S GDYF++EAI W +ELLT  + +  PA++LY TY+  D+
Sbjct:   49 KKYFDGTIIPENP-----RITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDFPAEKLYMTYYPDDK 134          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_MYCPE (Alanyl-tRNA synthetase OS=Mycoplasma penetrans GN=alaS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K  F G  +P ++     R  N+Q+C+R     ND+++VG  + HHTFFEMLGN+S GDYF+ EAIE+  EL+ KV++L   ++Y T +          D E+ D+W+K
Sbjct:   50 KTFFSGKENPPSK-----RLTNSQRCLRT----NDIENVGLTSRHHTFFEMLGNFSIGDYFRKEAIEFGAELVFKVFKLDPKKIYITVY--------EEDQESFDLWVK 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_FRASC (Alanyl-tRNA synthetase OS=Frankia sp. (strain CcI3) GN=alaS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            KP FLG        +   RA + QKC+R      D+++VG    H +FF+M GN+SFGDYFK EAI + +ELLT+ +   AD L+AT +          D+EA  IW K LPA R
Sbjct:   45 KPYFLGDLP-----APWPRAASVQKCVRTV----DIENVGHTARHASFFQMCGNFSFGDYFKAEAIPFAFELLTEGFGFKADDLWATVY--------LDDDEAEGIWRKLLPAER 142          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BACSK (Alanyl-tRNA synthetase OS=Bacillus clausii (strain KSM-K16) GN=alaS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 43/79 (54.43%), Postives = 50/79 (63.29%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGDEKA 287
            R  N QK IR     ND+++VGK   HHTFFEMLGN+S GDYFK +AIEW WE LT  K    P +RL  T    DE+A
Sbjct:   62 RIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEQAIEWAWEFLTDKKWIGFPQERLSVTVHPEDEEA 136          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_TROWT (Alanyl-tRNA synthetase OS=Tropheryma whipplei (strain Twist) GN=alaS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.946e-16
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            R  + QKCIR     +D+D+VGK   H TFF+M+GN+SFGDYFK EAIE+ WE L     L  DRL+ T  G D+++
Sbjct:   58 RVVSVQKCIRT----SDIDEVGKTPRHGTFFQMMGNFSFGDYFKKEAIEYAWEFLLSELDLAPDRLWVTIHGDDKES 130          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_TROW8 (Alanyl-tRNA synthetase OS=Tropheryma whipplei (strain TW08/27) GN=alaS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.946e-16
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            R  + QKCIR     +D+D+VGK   H TFF+M+GN+SFGDYFK EAIE+ WE L     L  DRL+ T  G D+++
Sbjct:   58 RVVSVQKCIRT----SDIDEVGKTPRHGTFFQMMGNFSFGDYFKKEAIEYAWEFLLSELDLAPDRLWVTIHGDDKES 130          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_STRSY (Alanyl-tRNA synthetase OS=Streptococcus suis (strain 05ZYH33) GN=alaS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.946e-16
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGD 278
            R  N QK IR     ND+++VGK   HHT FEMLGN+S GDYF++EAIEW +ELLT  + +  P D+LY TY+  D
Sbjct:   62 RITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFAFPKDKLYMTYYPDD 133          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_STRS2 (Alanyl-tRNA synthetase OS=Streptococcus suis (strain 98HAH33) GN=alaS PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 9.946e-16
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLT--KVYRLPADRLYATYFGGD 278
            R  N QK IR     ND+++VGK   HHT FEMLGN+S GDYF++EAIEW +ELLT  + +  P D+LY TY+  D
Sbjct:   62 RITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFAFPKDKLYMTYYPDD 133          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_STRPI7.616e-1647.37Alanyl-tRNA synthetase OS=Streptococcus pneumoniae... [more]
SYA_STRP27.616e-1647.37Alanyl-tRNA synthetase OS=Streptococcus pneumoniae... [more]
SYA_STRGC7.616e-1647.37Alanyl-tRNA synthetase OS=Streptococcus gordonii (... [more]
SYA_MYCPE7.616e-1640.37Alanyl-tRNA synthetase OS=Mycoplasma penetrans GN=... [more]
SYA_FRASC7.616e-1642.61Alanyl-tRNA synthetase OS=Frankia sp. (strain CcI3... [more]
SYA_BACSK7.616e-1654.43Alanyl-tRNA synthetase OS=Bacillus clausii (strain... [more]
SYA_TROWT9.946e-1650.65Alanyl-tRNA synthetase OS=Tropheryma whipplei (str... [more]
SYA_TROW89.946e-1650.65Alanyl-tRNA synthetase OS=Tropheryma whipplei (str... [more]
SYA_STRSY9.946e-1653.95Alanyl-tRNA synthetase OS=Streptococcus suis (stra... [more]
SYA_STRS29.946e-1653.95Alanyl-tRNA synthetase OS=Streptococcus suis (stra... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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