CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_LEGPH (Alanyl-tRNA synthetase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=alaS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.644e-26
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPAS 344
            K +FLG    + Q     RA   Q+C+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK EAI++ WE LT+V  +PA+RL+ T +          D EA DIWLK +  S
Sbjct:   46 KDLFLGLETRSYQ-----RAATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIPAERLWVTVY--------KEDLEAEDIWLKEMKVS 146          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_LEGPC (Alanyl-tRNA synthetase OS=Legionella pneumophila (strain Corby) GN=alaS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.644e-26
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPAS 344
            K +FLG    + Q     RA   Q+C+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK EAI++ WE LT+V  +PA+RL+ T +          D EA DIWLK +  S
Sbjct:   46 KDLFLGLETRSYQ-----RAATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIPAERLWVTVY--------KEDLEAEDIWLKEMKVS 146          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_LEGPA (Alanyl-tRNA synthetase OS=Legionella pneumophila (strain Paris) GN=alaS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.644e-26
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPAS 344
            K +FLG    + Q     RA   Q+C+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK EAI++ WE LT+V  +PA+RL+ T +          D EA DIWLK +  S
Sbjct:   46 KDLFLGLETRSYQ-----RAATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIPAERLWVTVY--------KEDLEAEDIWLKEMKVS 146          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BORPA (Alanyl-tRNA synthetase OS=Bordetella parapertussis GN=alaS PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.759e-26
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            RA ++Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK EAI++ WELLT+VYRLPA++L+ T +          D+EA DIW K   +PA R
Sbjct:   59 RATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRLPAEKLWVTVY--------QEDDEAYDIWAKEVGVPAER 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BORBR (Alanyl-tRNA synthetase OS=Bordetella bronchiseptica GN=alaS PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.759e-26
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            RA ++Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK EAI++ WELLT+VYRLPA++L+ T +          D+EA DIW K   +PA R
Sbjct:   59 RATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRLPAEKLWVTVY--------QEDDEAYDIWAKEVGVPAER 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CHLAA (Alanyl-tRNA synthetase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=alaS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.215e-26
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            K +FLG      +    +RA   QKC+R  GKHNDL++VG    HHTFFEMLGN+SFGDYFK EAI   W+LLT+ ++LP +RL+ T F GD++  + PD+EA  +W+
Sbjct:   49 KDVFLGR-----EQRPYSRAVTAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEEFKLPVERLWFTVFAGDDE--VPPDDEAAALWI 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BURS3 (Alanyl-tRNA synthetase OS=Burkholderia sp. (strain 383) GN=alaS PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.215e-26
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT DP       +RA   Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK++AI++ WELLT VY+LP D+L+ T +          D+EA DIW K
Sbjct:   46 KDVFLGT-DPRPY----SRATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKDKLWVTVY--------QEDDEAYDIWAK 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BURPS (Alanyl-tRNA synthetase OS=Burkholderia pseudomallei GN=alaS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.215e-26
Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            K +FLG      +    +RA   Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI + WELLT VY+LPAD+L+ T +  D+        EA DIW K   +PA R
Sbjct:   46 KDVFLGA-----ETRPYSRATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPADKLWVTVYHDDD--------EAYDIWAKEVGVPAER 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BURP6 (Alanyl-tRNA synthetase OS=Burkholderia pseudomallei (strain 668) GN=alaS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.215e-26
Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            K +FLG      +    +RA   Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI + WELLT VY+LPAD+L+ T +  D+        EA DIW K   +PA R
Sbjct:   46 KDVFLGA-----ETRPYSRATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPADKLWVTVYHDDD--------EAYDIWAKEVGVPAER 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BURP1 (Alanyl-tRNA synthetase OS=Burkholderia pseudomallei (strain 1710b) GN=alaS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.215e-26
Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            K +FLG      +    +RA   Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI + WELLT VY+LPAD+L+ T +  D+        EA DIW K   +PA R
Sbjct:   46 KDVFLGA-----ETRPYSRATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPADKLWVTVYHDDD--------EAYDIWAKEVGVPAER 149          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_LEGPH3.644e-2651.75Alanyl-tRNA synthetase OS=Legionella pneumophila s... [more]
SYA_LEGPC3.644e-2651.75Alanyl-tRNA synthetase OS=Legionella pneumophila (... [more]
SYA_LEGPA3.644e-2651.75Alanyl-tRNA synthetase OS=Legionella pneumophila (... [more]
SYA_BORPA4.759e-2657.58Alanyl-tRNA synthetase OS=Bordetella parapertussis... [more]
SYA_BORBR4.759e-2657.58Alanyl-tRNA synthetase OS=Bordetella bronchiseptic... [more]
SYA_CHLAA6.215e-2650.93Alanyl-tRNA synthetase OS=Chloroflexus aurantiacus... [more]
SYA_BURS36.215e-2654.13Alanyl-tRNA synthetase OS=Burkholderia sp. (strain... [more]
SYA_BURPS6.215e-2651.28Alanyl-tRNA synthetase OS=Burkholderia pseudomalle... [more]
SYA_BURP66.215e-2651.28Alanyl-tRNA synthetase OS=Burkholderia pseudomalle... [more]
SYA_BURP16.215e-2651.28Alanyl-tRNA synthetase OS=Burkholderia pseudomalle... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
back to top