CB417323

Overview
NameCB417323
Unique NameCB417323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_ORYNI (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Oryza nivara GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.425e-48
Identity = 94/112 (83.93%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            D TSDQKD PW YFISSTSLV+SITALLFRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFQGSFIFPECILIFGLILLLMIDLTSDQKDRPWFYFISSTSLVISITALLFRWREEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_LEMMI (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Lemna minor GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.425e-48
Identity = 95/112 (84.82%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNE FILDSTRIFMKAFHLLLF+GSFI PEC            DSTSDQKD PW YFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNEVFILDSTRIFMKAFHLLLFNGSFILPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_MAIZE (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Zea mays GN=ndhB2 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.473e-48
Identity = 94/112 (83.93%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            D TSDQKD PW YFISSTSLV+SITALLFRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDLTSDQKDRPWFYFISSTSLVISITALLFRWREEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_MAIZE (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Zea mays GN=ndhB1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.473e-48
Identity = 94/112 (83.93%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            D TSDQKD PW YFISSTSLV+SITALLFRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDLTSDQKDRPWFYFISSTSLVISITALLFRWREEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_AGRST (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Agrostis stolonifera GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.842e-48
Identity = 94/112 (83.93%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GS IFPEC            DSTSDQKD PW YFISSTSLV+SITALLFRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFQGSSIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVISITALLFRWREEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_AGRST (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Agrostis stolonifera GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.842e-48
Identity = 94/112 (83.93%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GS IFPEC            DSTSDQKD PW YFISSTSLV+SITALLFRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFQGSSIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVISITALLFRWREEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C_TRACE (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Trachelium caeruleum GN=ndhB PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.629e-48
Identity = 94/112 (83.93%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QN+NFIL+ TRIFMKAFHL LFDGSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSI ALLFRWREEPMISFSGNFQTNNFNEIFQ LILLCSTLCIPLSVE
Sbjct:    6 QNDNFILNFTRIFMKAFHLPLFDGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSIMALLFRWREEPMISFSGNFQTNNFNEIFQVLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_LOTJA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Lotus japonicus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.700e-47
Identity = 94/112 (83.93%), Postives = 94/112 (83.93%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNEN ILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDI W YFISSTSLVMSI  LLFRWREEPMISFSGNFQTNNFNEIFQFLILL STLCIPLSVE
Sbjct:    6 QNENLILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDISWFYFISSTSLVMSIVVLLFRWREEPMISFSGNFQTNNFNEIFQFLILLSSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_LOTJA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Lotus japonicus GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.700e-47
Identity = 94/112 (83.93%), Postives = 94/112 (83.93%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNEN ILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDI W YFISSTSLVMSI  LLFRWREEPMISFSGNFQTNNFNEIFQFLILL STLCIPLSVE
Sbjct:    6 QNENLILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDISWFYFISSTSLVMSIVVLLFRWREEPMISFSGNFQTNNFNEIFQFLILLSSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_WHEAT (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Triticum aestivum GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.102e-46
Identity = 92/112 (82.14%), Postives = 95/112 (84.82%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDST IFMKAFHLLLF+GSFIFPEC            DSTS QKD PW YFISST LV+SITALLFRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTSIFMKAFHLLLFNGSFIFPECILIFGLILLLMFDSTSVQKDRPWFYFISSTCLVISITALLFRWREEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
The following BLAST results are available for this feature:
BLAST of CB417323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
NU2C1_ORYNI3.425e-4883.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_LEMMI3.425e-4884.82NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C2_MAIZE4.473e-4883.93NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_MAIZE4.473e-4883.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C2_AGRST5.842e-4883.93NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_AGRST5.842e-4883.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C_TRACE7.629e-4883.93NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C2_LOTJA1.700e-4783.93NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_LOTJA1.700e-4783.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C2_WHEAT1.102e-4682.14NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionEST0400 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P067 similar to NADH dehydrogenase subunit B(acc# AAK17929), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417323 ID=CB417323; Name=CB417323; organism=Citrus sinensis; type=EST; length=337bp
ACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCT
TTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCNTA
ATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAA
AGATATACCTTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCA
TAACGGCCCTATTGTTCCGCTGGAGAGAAGAACCTATGATTAGCTTTTCG
GGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTT
ACTATGTTCAACTCTATGTATTCCTCTATCCGTGGAG
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