CB417323

Overview
NameCB417323
Unique NameCB417323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_ANGEV (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Angiopteris evecta GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.228e-22
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 2
Query:   41 MKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            MK F+L L  G+ I PEC            D  SD+K+ PWLY +S T+LV S+  LLF+W+EEP+ +F   FQ N+FN IF+  IL+CS LCIPLS++
Sbjct:    1 MKDFNLFLLYGNSILPECILILSLIVTIIIDLISDEKNTPWLYLVSLTALVTSVVILLFQWKEEPVSTFFETFQINSFNNIFRLFILICSLLCIPLSID 99          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_ANGEV (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Angiopteris evecta GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.228e-22
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 2
Query:   41 MKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            MK F+L L  G+ I PEC            D  SD+K+ PWLY +S T+LV S+  LLF+W+EEP+ +F   FQ N+FN IF+  IL+CS LCIPLS++
Sbjct:    1 MKDFNLFLLYGNSILPECILILSLIVTIIIDLISDEKNTPWLYLVSLTALVTSVVILLFQWKEEPVSTFFETFQINSFNNIFRLFILICSLLCIPLSID 99          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C_MARPO (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Marchantia polymorpha GN=ndhB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.730e-20
Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = 2
Query:   71 GSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            GS I PEC            D T  +KD  WLYFIS TSL++SI  LLF+++ +P+ISF G+FQT++FN IFQ  I+ CS LCIPLS+E
Sbjct:   12 GSTILPECILIFSLLIILIIDLTFPKKDTIWLYFISLTSLLISIIILLFQYKTDPIISFLGSFQTDSFNRIFQSFIVFCSILCIPLSIE 100          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_ANTFO (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Anthoceros formosae GN=ndhB2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.148e-19
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 2
Query:   50 FHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            F   L DGS I PEC            D TS++K   WLYFIS TSL++SIT LLF+ +EEP+ SFSG+FQT+ FN IF+  I   S LCIPLS+E
Sbjct:    5 FGSFLSDGSSILPECILISSLIIILLIDLTSEKKTY-WLYFISLTSLIISITVLLFQLKEEPIFSFSGSFQTDGFNGIFRISIAFSSLLCIPLSME 99          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_ANTFO (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Anthoceros formosae GN=ndhB1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.148e-19
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 2
Query:   50 FHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            F   L DGS I PEC            D TS++K   WLYFIS TSL++SIT LLF+ +EEP+ SFSG+FQT+ FN IF+  I   S LCIPLS+E
Sbjct:    5 FGSFLSDGSSILPECILISSLIIILLIDLTSEKKTY-WLYFISLTSLIISITVLLFQLKEEPIFSFSGSFQTDGFNGIFRISIAFSSLLCIPLSME 99          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Physcomitrella patens GN=ndhB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.715e-15
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   56 LLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            L  F  + I PEC            D     KD    +FIS  SL++SI  L+F+ +EEP+ISF GNFQ +NFN+IF+  I LCS LCIPLS++
Sbjct:    7 LSFFYKTTILPECVLIFCLISILILDLILKIKDKNVFFFISLVSLLLSIFILIFQLKEEPVISFLGNFQADNFNKIFRIFIALCSILCIPLSID 100          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_PSINU (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Psilotum nudum GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.991e-15
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 2
Query:   41 MKAFHLLLFDGSFIFPECXXXXXXXXXXXXD--STSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            MK     L   S I PEC            D  S  ++ D  W Y IS  +L +SI  LL +W +EP+++FS  FQ + FN+IF+F +L+CS LCIPLSV+
Sbjct:    1 MKEIESFLVYSSSILPECILIFSSIGILSIDLLSLPNEGDTFWSYSISLAALAISIIILLLQWNKEPVLTFSETFQISRFNDIFRFFLLICSFLCIPLSVD 101          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_PSINU (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Psilotum nudum GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.991e-15
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 2
Query:   41 MKAFHLLLFDGSFIFPECXXXXXXXXXXXXD--STSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            MK     L   S I PEC            D  S  ++ D  W Y IS  +L +SI  LL +W +EP+++FS  FQ + FN+IF+F +L+CS LCIPLSV+
Sbjct:    1 MKEIESFLVYSSSILPECILIFSSIGILSIDLLSLPNEGDTFWSYSISLAALAISIIILLLQWNKEPVLTFSETFQISRFNDIFRFFLLICSFLCIPLSVD 101          
The following BLAST results are available for this feature:
BLAST of CB417323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
NU2C2_ANGEV3.228e-2248.48NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_ANGEV3.228e-2248.48NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C_MARPO6.730e-2052.81NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C2_ANTFO1.148e-1953.13NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_ANTFO1.148e-1953.13NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C_PHYPA1.715e-1545.74NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C2_PSINU4.991e-1541.58NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_PSINU4.991e-1541.58NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionEST0400 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P067 similar to NADH dehydrogenase subunit B(acc# AAK17929), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417323 ID=CB417323; Name=CB417323; organism=Citrus sinensis; type=EST; length=337bp
ACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCT
TTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCNTA
ATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAA
AGATATACCTTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCA
TAACGGCCCTATTGTTCCGCTGGAGAGAAGAACCTATGATTAGCTTTTCG
GGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTT
ACTATGTTCAACTCTATGTATTCCTCTATCCGTGGAG
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