CB417323 | Citrus Genome Database

Overview


Name	CB417323
Unique Name	CB417323
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	337

Libraries


Library Name	Type
Mature peel (flavedo) cDNA subtraction library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_SOLBU (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Solanum bulbocastanum GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.322e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_PANGI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Panax ginseng GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.322e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_NICTO (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Nicotiana tomentosiformis GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.322e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_NICSY (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Nicotiana sylvestris GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.322e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_HELAN (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Helianthus annuus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.322e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_CARPA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Carica papaya GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.322e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_ATRBE (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Atropa belladonna GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.322e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_SPIOL (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Spinacia oleracea GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.322e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_SOLLC (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Solanum lycopersicum GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.322e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_SOLBU (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Solanum bulbocastanum GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.322e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

The following BLAST results are available for this feature:

BLAST of CB417323 vs. ExPASy Swiss-Prot

BLAST of CB417323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
NU2C2_SOLBU	4.322e-51	88.39	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_PANGI	4.322e-51	88.39	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_NICTO	4.322e-51	88.39	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_NICSY	4.322e-51	88.39	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_HELAN	4.322e-51	88.39	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_CARPA	4.322e-51	88.39	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_ATRBE	4.322e-51	88.39	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C1_SPIOL	4.322e-51	88.39	NAD(P)H-quinone oxidoreductase subunit 2 A, chloro...	[more]
NU2C1_SOLLC	4.322e-51	88.39	NAD(P)H-quinone oxidoreductase subunit 2 A, chloro...	[more]
NU2C1_SOLBU	4.322e-51	88.39	NAD(P)H-quinone oxidoreductase subunit 2 A, chloro...	[more]

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Properties


Property Name	Value
Genbank description	EST0400 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P067 similar to NADH dehydrogenase subunit B(acc# AAK17929), mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB417323 ID=CB417323; Name=CB417323; organism=Citrus sinensis; type=EST; length=337bp
ACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCT
TTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCNTA
ATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAA
AGATATACCTTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCA
TAACGGCCCTATTGTTCCGCTGGAGAGAAGAACCTATGATTAGCTTTTCG
GGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTT
ACTATGTTCAACTCTATGTATTCCTCTATCCGTGGAG