CB417323

Overview
NameCB417323
Unique NameCB417323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_CHLSC (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Chloranthus spicatus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.645e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_CALFG (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Calycanthus floridus var. glaucus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.645e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_PLAOC (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Platanus occidentalis GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.645e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_PIPCE (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Piper cenocladum GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.645e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_LIRTU (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Liriodendron tulipifera GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.645e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_DRIGR (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Drimys granadensis GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.645e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_CHLSC (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Chloranthus spicatus GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.645e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_CALFG (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Calycanthus floridus var. glaucus GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.645e-51
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 2
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_SOLTU (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Solanum tuberosum GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.629e-51
Identity = 98/112 (87.50%), Postives = 99/112 (88.39%), Query Frame = 2
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLV+SITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVLSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117          
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_LACSA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Lactuca sativa GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.629e-51
Identity = 98/112 (87.50%), Postives = 99/112 (88.39%), Query Frame = 2
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQKDIPWLYFISSTSLVMSIT+LLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITSLLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117          
The following BLAST results are available for this feature:
BLAST of CB417323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
NU2C2_CHLSC5.645e-5188.39NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_CALFG5.645e-5188.39NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_PLAOC5.645e-5188.39NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_PIPCE5.645e-5188.39NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_LIRTU5.645e-5188.39NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_DRIGR5.645e-5188.39NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_CHLSC5.645e-5188.39NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_CALFG5.645e-5188.39NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C2_SOLTU9.629e-5187.50NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_LACSA9.629e-5187.50NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionEST0400 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P067 similar to NADH dehydrogenase subunit B(acc# AAK17929), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417323 ID=CB417323; Name=CB417323; organism=Citrus sinensis; type=EST; length=337bp
ACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCT
TTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCNTA
ATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAA
AGATATACCTTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCA
TAACGGCCCTATTGTTCCGCTGGAGAGAAGAACCTATGATTAGCTTTTCG
GGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTT
ACTATGTTCAACTCTATGTATTCCTCTATCCGTGGAG
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