CB417323

Overview
NameCB417323
Unique NameCB417323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_IPOPU (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Ipomoea purpurea GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.151e-50
Identity = 97/112 (86.61%), Postives = 98/112 (87.50%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS IFPEC            DSTSDQK+ PWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKERPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_DAUCA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Daucus carota GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.151e-50
Identity = 97/112 (86.61%), Postives = 98/112 (87.50%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGS I PEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSLIVPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPVISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_RANMC (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Ranunculus macranthus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.065e-49
Identity = 97/112 (86.61%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            D TSDQKDIPWLYFISSTSLVMSI ALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDLTSDQKDIPWLYFISSTSLVMSIAALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_AMBTC (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Amborella trichopoda GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.065e-49
Identity = 97/112 (86.61%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKD PW YFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_RANMC (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Ranunculus macranthus GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.065e-49
Identity = 97/112 (86.61%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            D TSDQKDIPWLYFISSTSLVMSI ALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDLTSDQKDIPWLYFISSTSLVMSIAALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_AMBTC (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Amborella trichopoda GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.065e-49
Identity = 97/112 (86.61%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKD PW YFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_SOYBN (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Glycine max GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.390e-49
Identity = 97/112 (86.61%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHL LFDGSFIFPEC            DSTSDQKDI W YFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLPLFDGSFIFPECILIFGLILLLMIDSTSDQKDISWFYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_SOYBN (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Glycine max GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.390e-49
Identity = 97/112 (86.61%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHL LFDGSFIFPEC            DSTSDQKDI W YFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLPLFDGSFIFPECILIFGLILLLMIDSTSDQKDISWFYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C_ALLTE (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Allium textile GN=ndhB PE=3 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 4.045e-49
Identity = 95/112 (84.82%), Postives = 98/112 (87.50%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF+GSFIFPEC            DSTSDQKD PW YFISSTSLVMSITALLFRW+EEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFNGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_LOLPR (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Lolium perenne GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.284e-49
Identity = 95/112 (84.82%), Postives = 98/112 (87.50%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF+GSFIFPEC            DSTSDQKD PW YFISSTSLV+SITALLFRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFNGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVISITALLFRWREEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
The following BLAST results are available for this feature:
BLAST of CB417323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
NU2C1_IPOPU8.151e-5086.61NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_DAUCA8.151e-5086.61NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C2_RANMC1.065e-4986.61NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_AMBTC1.065e-4986.61NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_RANMC1.065e-4986.61NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_AMBTC1.065e-4986.61NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C2_SOYBN1.390e-4986.61NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_SOYBN1.390e-4986.61NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C_ALLTE4.045e-4984.82NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C2_LOLPR5.284e-4984.82NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionEST0400 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P067 similar to NADH dehydrogenase subunit B(acc# AAK17929), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417323 ID=CB417323; Name=CB417323; organism=Citrus sinensis; type=EST; length=337bp
ACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCT
TTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCNTA
ATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAA
AGATATACCTTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCA
TAACGGCCCTATTGTTCCGCTGGAGAGAAGAACCTATGATTAGCTTTTCG
GGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTT
ACTATGTTCAACTCTATGTATTCCTCTATCCGTGGAG
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