CB417323

Overview
NameCB417323
Unique NameCB417323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_LOLPR (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Lolium perenne GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.284e-49
Identity = 95/112 (84.82%), Postives = 98/112 (87.50%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF+GSFIFPEC            DSTSDQKD PW YFISSTSLV+SITALLFRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFNGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVISITALLFRWREEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C_YUCGL (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Yucca glauca GN=ndhB PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 6.901e-49
Identity = 95/112 (84.82%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKD PW YFISSTSLVMSITALLFRW+EEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C_SISMO (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Sisyrinchium montanum GN=ndhB PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 6.901e-49
Identity = 95/112 (84.82%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKD PW YFISSTSLVMSITALLFRW+EEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C_NAREL (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Narcissus elegans GN=ndhB PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 6.901e-49
Identity = 95/112 (84.82%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKD PW YFISSTSLVMSITALLFRW+EEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C_MUSCM (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Muscari comosum GN=ndhB PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 6.901e-49
Identity = 95/112 (84.82%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKD PW YFISSTSLVMSITALLFRW+EEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C_MUIMA (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Muilla maritima GN=ndhB PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 6.901e-49
Identity = 95/112 (84.82%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKD PW YFISSTSLVMSITALLFRW+EEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C_MAIRA (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Maianthemum racemosum GN=ndhB PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 6.901e-49
Identity = 95/112 (84.82%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKD PW YFISSTSLVMSITALLFRW+EEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_DIOEL (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Dioscorea elephantipes GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.901e-49
Identity = 95/112 (84.82%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKD PW YFISST+LVMSITALLFRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTTLVMSITALLFRWREEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_DIOEL (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Dioscorea elephantipes GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.901e-49
Identity = 95/112 (84.82%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKD PW YFISST+LVMSITALLFRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTTLVMSITALLFRWREEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
[Close]
BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C_COECR (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Coelogyne cristata GN=ndhB PE=3 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 9.012e-49
Identity = 95/112 (84.82%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLF GSFIFPEC            DSTSDQKD PW YFISSTSLVMSITAL FRWREEP+ISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTSDQKDRPWFYFISSTSLVMSITALFFRWREEPIISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117
The following BLAST results are available for this feature:
BLAST of CB417323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
NU2C1_LOLPR5.284e-4984.82NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C_YUCGL6.901e-4984.82NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C_SISMO6.901e-4984.82NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C_NAREL6.901e-4984.82NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C_MUSCM6.901e-4984.82NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C_MUIMA6.901e-4984.82NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C_MAIRA6.901e-4984.82NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C2_DIOEL6.901e-4984.82NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_DIOEL6.901e-4984.82NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C_COECR9.012e-4984.82NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionEST0400 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P067 similar to NADH dehydrogenase subunit B(acc# AAK17929), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417323 ID=CB417323; Name=CB417323; organism=Citrus sinensis; type=EST; length=337bp
ACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCT
TTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCNTA
ATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAA
AGATATACCTTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCA
TAACGGCCCTATTGTTCCGCTGGAGAGAAGAACCTATGATTAGCTTTTCG
GGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTT
ACTATGTTCAACTCTATGTATTCCTCTATCCGTGGAG
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