CB417328

Overview
NameCB417328
Unique NameCB417328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417328 vs. ExPASy Swiss-Prot
Match: ACOC_BOVIN (Cytoplasmic aconitate hydratase OS=Bos taurus GN=ACO1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.473e-41
Identity = 79/128 (61.72%), Postives = 103/128 (80.47%), Query Frame = 3
Query:   12 GHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPNSVSEIRPGQDVRVATDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 395
            G   ++LAG EYGSGSSRDWAAKGP LLG++AV+A+S+ERIHRSNLVGMG+IPL + PGE+A+T GLTG ERYTI +P +   ++P   V++  D+GK+F  V+RFDT+VEL YF +GGIL Y+IR +
Sbjct:  763 GLPLIVLAGKEYGSGSSRDWAAKGPFLLGIRAVLAESYERIHRSNLVGMGVIPLEYLPGENADTLGLTGRERYTISIPET---LKPRMKVQIKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKM 887          
BLAST of CB417328 vs. ExPASy Swiss-Prot
Match: ACOC_MOUSE (Cytoplasmic aconitate hydratase OS=Mus musculus GN=Aco1 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 4.536e-41
Identity = 79/128 (61.72%), Postives = 103/128 (80.47%), Query Frame = 3
Query:   12 GHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPNSVSEIRPGQDVRVATDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 395
            G   ++LAG EYGSGSSRDWAAKGP LLG+KAV+A+S+ERIHRSNLVGMG+IPL + PGE A++ GLTG ERYTI++P    +++P   V++  D+GK+F  V+RFDT+VEL YF +GGIL Y+IR +
Sbjct:  763 GLPLIVLAGKEYGSGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGETADSLGLTGRERYTINIP---EDLKPRMTVQIKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKM 887          
BLAST of CB417328 vs. ExPASy Swiss-Prot
Match: ACOC_HUMAN (Cytoplasmic aconitate hydratase OS=Homo sapiens GN=ACO1 PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 5.015e-40
Identity = 79/128 (61.72%), Postives = 102/128 (79.69%), Query Frame = 3
Query:   12 GHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPNSVSEIRPGQDVRVATDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 395
            G   ++LAG EYG+GSSRDWAAKGP LLG+KAV+A+S+ERIHRSNLVGMG+IPL + PGE+A+  GLTG ERYTI +P +   ++P   V+V  D+GK+F  V+RFDT+VEL YF +GGIL Y+IR +
Sbjct:  763 GLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPEN---LKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKM 887          
BLAST of CB417328 vs. ExPASy Swiss-Prot
Match: ACOC_RAT (Cytoplasmic aconitate hydratase OS=Rattus norvegicus GN=Aco1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.245e-39
Identity = 77/128 (60.16%), Postives = 99/128 (77.34%), Query Frame = 3
Query:   12 GHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPNSVSEIRPGQDVRVATDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 395
            G   ++LAG EYGSGSSRDWAAKGP LLG+KAV+A+S+ER H SNLVGMG+IPL + PGE A++ GLTG ERYTI +P     ++P   V++  D+GK+F  V+RFDT+VEL YF +GGIL Y+IR +
Sbjct:  763 GLPLIVLAGKEYGSGSSRDWAAKGPFLLGIKAVLAESYERTHCSNLVGMGVIPLEYLPGETADSLGLTGRERYTIHIP---EHLKPRMKVQIKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKM 887          
BLAST of CB417328 vs. ExPASy Swiss-Prot
Match: ACOC_CAEEL (Probable cytoplasmic aconitate hydratase OS=Caenorhabditis elegans GN=aco-1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.107e-38
Identity = 78/132 (59.09%), Postives = 102/132 (77.27%), Query Frame = 3
Query:    3 KNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPNSVSEIRPGQDVRVATDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 398
            K+ G   +ILAG EYG GSSRDWAAKGP L GVKAVIA+SFERIHRSNL+GMGIIP  ++ G++A++ GLTG E+++I +P+   +++PGQ + V   +G  F  + RFDTEVEL Y+ +GGILQY+IR LI
Sbjct:  758 KDAGIPAIILAGKEYGCGSSRDWAAKGPFLQGVKAVIAESFERIHRSNLIGMGIIPFQYQAGQNADSLGLTGKEQFSIGVPD---DLKPGQLIDVNVSNGSVFQVICRFDTEVELTYYRNGGILQYMIRKLI 886          
BLAST of CB417328 vs. ExPASy Swiss-Prot
Match: IREB2_XENLA (Iron-responsive element-binding protein 2 OS=Xenopus laevis GN=ireb2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.728e-32
Identity = 66/125 (52.80%), Postives = 90/125 (72.00%), Query Frame = 3
Query:   24 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPNSVSEIRPGQDVRVATDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 398
            +I+AG +YG G+SRDWAAKGP LLGV+ VIA+S+E+IH+ +LVGMGI PL F  GE+AET GL+G E+Y++ LP    ++ PG  V + T++GK F  +  FD E E+  + HGGIL YV R  +
Sbjct:  834 IIIAGKKYGLGNSRDWAAKGPFLLGVRVVIAESYEKIHKDHLVGMGIAPLQFLSGENAETLGLSGKEQYSLSLP---VDLTPGHKVEIKTNTGKIFHVIAAFDNEAEVTLYKHGGILSYVARKYL 955          
BLAST of CB417328 vs. ExPASy Swiss-Prot
Match: IREB2_RAT (Iron-responsive element-binding protein 2 OS=Rattus norvegicus GN=Ireb2 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.848e-32
Identity = 63/132 (47.73%), Postives = 95/132 (71.97%), Query Frame = 3
Query:    3 KNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPNSVSEIRPGQDVRVATDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 398
            + EG   +ILAG +YGSG+SRDWAAKGP LLGVKAV+A+S+E+IH+ +L+G+GI PL F PGE+A++ GL+G E +++  P    E+ PG  + + T +GK F+ +  F+ +VE+  + HGG+L +V R  +
Sbjct:  835 QKEGIPLIILAGKKYGSGNSRDWAAKGPYLLGVKAVLAESYEKIHKDHLIGIGIAPLEFLPGENADSLGLSGREVFSLSFP---EELFPGITLNIKTSTGKEFSVIAAFENDVEITLYKHGGLLNFVARKFL 963          
BLAST of CB417328 vs. ExPASy Swiss-Prot
Match: IREB2_PIG (Iron-responsive element-binding protein 2 OS=Sus scrofa GN=IREB2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.848e-32
Identity = 63/129 (48.84%), Postives = 94/129 (72.87%), Query Frame = 3
Query:    3 KNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPNSVSEIRPGQDVRVATDSGKSFTCVIRFDTEVELAYFDHGGILQYVIR 389
            + EG   +ILAG +YGSG+SRDWAAKGP LLGVKAV+A+S+E+IH+ +L+G+GI PL F PGE+A++ GL+G E +++  P    E+ PG  + + T +GK F+ +  F+ +VE+  + HGG+L +V R
Sbjct:  836 QKEGIPLIILAGKKYGSGNSRDWAAKGPYLLGVKAVLAESYEKIHKDHLIGIGIAPLQFLPGENADSLGLSGRETFSLTFP---EELSPGVTLNIKTSTGKIFSVIASFENDVEIILYKHGGLLNFVAR 961          
BLAST of CB417328 vs. ExPASy Swiss-Prot
Match: IREB2_HUMAN (Iron-responsive element-binding protein 2 OS=Homo sapiens GN=IREB2 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.026e-32
Identity = 63/129 (48.84%), Postives = 94/129 (72.87%), Query Frame = 3
Query:    3 KNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPNSVSEIRPGQDVRVATDSGKSFTCVIRFDTEVELAYFDHGGILQYVIR 389
            + EG   +ILAG +YGSG+SRDWAAKGP LLGVKAV+A+S+E+IH+ +L+G+GI PL F PGE+A++ GL+G E +++  P    E+ PG  + + T +GK F+ +  F+ +VE+  + HGG+L +V R
Sbjct:  835 QKEGIPLIILAGKKYGSGNSRDWAAKGPYLLGVKAVLAESYEKIHKDHLIGIGIAPLQFLPGENADSLGLSGRETFSLTFP---EELSPGITLNIQTSTGKVFSVIASFEDDVEITLYKHGGLLNFVAR 960          
BLAST of CB417328 vs. ExPASy Swiss-Prot
Match: ACON_DEIRA (Aconitate hydratase OS=Deinococcus radiodurans GN=acn PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.574e-32
Identity = 72/140 (51.43%), Postives = 95/140 (67.86%), Query Frame = 3
Query:    3 KNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPNSVSEIRPGQDVRVAT----DSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLINVRQ 410
            K  G   V+LAG +YG GSSRDWAAKG  LLGVKAVIA+SFERIHRSNLVGMG++PL +K GE A++ G+ G E +   LP    +++P QDV V       + +  T + R DT VE+ Y+ +GGILQ V+R +++  Q
Sbjct:  765 KEAGVPLVVLAGKDYGMGSSRDWAAKGTFLLGVKAVIAESFERIHRSNLVGMGVLPLQYKNGETADSLGINGDETFEFVLP---GDLKPRQDVTVKVTGKDGNTRDITVMCRIDTPVEIDYYKNGGILQTVLRGILSKSQ 901          
The following BLAST results are available for this feature:
BLAST of CB417328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
ACOC_BOVIN3.473e-4161.72Cytoplasmic aconitate hydratase OS=Bos taurus GN=A... [more]
ACOC_MOUSE4.536e-4161.72Cytoplasmic aconitate hydratase OS=Mus musculus GN... [more]
ACOC_HUMAN5.015e-4061.72Cytoplasmic aconitate hydratase OS=Homo sapiens GN... [more]
ACOC_RAT4.245e-3960.16Cytoplasmic aconitate hydratase OS=Rattus norvegic... [more]
ACOC_CAEEL2.107e-3859.09Probable cytoplasmic aconitate hydratase OS=Caenor... [more]
IREB2_XENLA1.728e-3252.80Iron-responsive element-binding protein 2 OS=Xenop... [more]
IREB2_RAT3.848e-3247.73Iron-responsive element-binding protein 2 OS=Rattu... [more]
IREB2_PIG3.848e-3248.84Iron-responsive element-binding protein 2 OS=Sus s... [more]
IREB2_HUMAN5.026e-3248.84Iron-responsive element-binding protein 2 OS=Homo ... [more]
ACON_DEIRA8.574e-3251.43Aconitate hydratase OS=Deinococcus radiodurans GN=... [more]

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Properties
Property NameValue
Genbank descriptionEST0405 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P075 similar to aconitase (acc# AAC26045), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417328 ID=CB417328; Name=CB417328; organism=Citrus sinensis; type=EST; length=607bp
ACAAGAATGAGGGGCACGATACTGTTATTTTAGCTGGTGCTGAGTATGGC
AGTGGAAGTTCTCGTGATTGGGCTGCTAAGGGTCCAATGTTGCTGGGTGT
GAAAGCGGTGATTGCAAAAAGCTTTGAGCGAATTCACCGTAGTAATTTGG
TGGGTATGGGCATAATCCCGTTGTGTTTCAAGCCTGGTGAGGATGCCGAG
ACTCATGGGTTGACTGGCCATGAACGCTACACCATTGACCTTCCAAACAG
TGTGAGTGAAATTAGACCTGGTCAGGATGTCAGAGTGGCCACAGACAGTG
GCAAGTCATTCACATGCGTTATAAGATTTGATACAGAGGTGGAATTGGCT
TACTTTGATCATGGAGGCATACTGCAATATGTCATAAGAAACTTGATCAA
TGTGAGACAATGATTCCGCAAGAACCAACTGGTGCTCTTCAACCGGGGTC
TACTTCTTCATTGCTTTAACGCTTTAGCAGATTCAGCCGACGTCCATGAA
TAAATTACGGAACTAAGTTTAGAAATTTCTGTTTTTTGCAGTCATTTTGA
ATTACATTTTTATATCGAGAGCTTTGATAAACAATAGGACACGCCCTAGA
CATGAAT
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