CB417332

Overview
NameCB417332
Unique NameCB417332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26
Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            LPP+ D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE
Sbjct:  143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSE 234          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26
Identity = 60/126 (47.62%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  360 AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            + FVV +   V    ++    V + R+   I   LPP++D ++ +M   EKP VTY DVGG   Q ++++E VELP+L  + + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV GSE
Sbjct:   78 SNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSE 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26
Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 3
Query:  405 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            ++ G  V + +    +   LPP+ D S+ M+  +EKPD++Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA  T A FIRV+GSE
Sbjct:  120 LKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSE 230          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26
Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            LPP+ D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE
Sbjct:  143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSE 234          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.571e-26
Identity = 63/126 (50.00%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  369 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            V+GL D  K+ P D+     VGV+++ Y I   LP   D  V  M V+E+P   Y+D+GG  +QI+++ E + LPM H EKF  LGI PPKGVL YGPPGTGKTLLARA A +T A F+++ G +L
Sbjct:  139 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 259          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.969e-26
Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 3
Query:  462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            LPP  D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE
Sbjct:  143 LPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSE 234          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.018e-25
Identity = 54/105 (51.43%), Postives = 76/105 (72.38%), Query Frame = 3
Query:  423 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            V + R+   +   LPP+ D S+ ++  +EKP  +Y+D+GG   Q ++MRE VELP+ H   + ++GIDPP+GVL YGPPGTGKT+LA+AVA+ T A FIRV+GSE
Sbjct:  115 VALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSE 219          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.018e-25
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 3
Query:  360 AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            + +VV +   +    ++    V + R+   +   LPP+ D S+ M+   EKPDVTY DVGG   Q +++RE VELP+   + + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV GSE
Sbjct:  110 SNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSE 235          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.330e-25
Identity = 57/126 (45.24%), Postives = 85/126 (67.46%), Query Frame = 3
Query:  360 AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            + +VV +   +    ++    V + R+   +   LPP+ D S++M+  +E+PDV+Y DVGG   Q +++RE VELP+   + + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV+GSE
Sbjct:   78 SNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSE 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 56/126 (44.44%), Postives = 82/126 (65.08%), Query Frame = 3
Query:  363 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            ++ V +   V    +E G  V +      I   L    DP + +M +++ P  +Y D+GG + QI++++E VELP+ HPE + ++GI PPKGV+ YG PGTGKTLLA+AVAN+T A F+RV+GSEL
Sbjct:  136 EYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSEL 261          
The following BLAST results are available for this feature:
BLAST of CB417332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PRS6B_HUMAN3.500e-2658.7026S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_ENCCU3.500e-2647.6226S protease regulatory subunit 6B homolog OS=Ence... [more]
PRS6B_CAEEL3.500e-2649.55Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6B_BOVIN3.500e-2658.7026S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6A_MOUSE4.571e-2650.0026S protease regulatory subunit 6A OS=Mus musculus... [more]
PRS6B_MOUSE5.969e-2658.7026S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS6B_DICDI1.018e-2551.4326S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6B_ASPNG1.018e-2546.8326S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS6B_SCHPO1.330e-2545.2426S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS4_SCHPO6.600e-2544.4426S protease regulatory subunit 4 homolog OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionEST0409 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P081 similar to 26S protease regulatory subunit 7 (acc# O64982), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417332 ID=CB417332; Name=CB417332; organism=Citrus sinensis; type=EST; length=741bp
CCAAGCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAG
ATCAAGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCT
TCTCAAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGG
AGAAAGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATC
AAGGAGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTC
GGATAAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCA
CCAAGATAATCAGTCCAAACCCTGAAGATGCCAAATATGTTATAAATGTT
AAGCAGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAAC
GGATATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGA
TTCAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACC
GTGGAAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGA
GCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTG
AGAAATTTGTAAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTATGCTAT
GGTCCTCCTGGCACTGGTAAAACATTATTAGCCAGAGCTGTAGCTAACAG
AACCGATGCTTGTTTTATTCGTGTGATTGGGAGTGAGCTTG
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