CB417332
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26 Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 3 Query: 462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 LPP+ D S+ M+T ++KPDV Y D+GG Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE Sbjct: 143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSE 234
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26 Identity = 60/126 (47.62%), Postives = 83/126 (65.87%), Query Frame = 3 Query: 360 AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 + FVV + V ++ V + R+ I LPP++D ++ +M EKP VTY DVGG Q ++++E VELP+L + + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV GSE Sbjct: 78 SNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSE 203
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26 Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 3 Query: 405 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 ++ G V + + + LPP+ D S+ M+ +EKPD++Y D+GG Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA T A FIRV+GSE Sbjct: 120 LKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSE 230
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26 Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 3 Query: 462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 LPP+ D S+ M+T ++KPDV Y D+GG Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE Sbjct: 143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSE 234
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.571e-26 Identity = 63/126 (50.00%), Postives = 83/126 (65.87%), Query Frame = 3 Query: 369 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 V+GL D K+ P D+ VGV+++ Y I LP D V M V+E+P Y+D+GG +QI+++ E + LPM H EKF LGI PPKGVL YGPPGTGKTLLARA A +T A F+++ G +L Sbjct: 139 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 259
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.969e-26 Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 3 Query: 462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 LPP D S+ M+T ++KPDV Y D+GG Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE Sbjct: 143 LPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSE 234
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.018e-25 Identity = 54/105 (51.43%), Postives = 76/105 (72.38%), Query Frame = 3 Query: 423 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 V + R+ + LPP+ D S+ ++ +EKP +Y+D+GG Q ++MRE VELP+ H + ++GIDPP+GVL YGPPGTGKT+LA+AVA+ T A FIRV+GSE Sbjct: 115 VALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSE 219
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.018e-25 Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 3 Query: 360 AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 + +VV + + ++ V + R+ + LPP+ D S+ M+ EKPDVTY DVGG Q +++RE VELP+ + + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV GSE Sbjct: 110 SNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSE 235
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.330e-25 Identity = 57/126 (45.24%), Postives = 85/126 (67.46%), Query Frame = 3 Query: 360 AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 + +VV + + ++ V + R+ + LPP+ D S++M+ +E+PDV+Y DVGG Q +++RE VELP+ + + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV+GSE Sbjct: 78 SNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSE 203
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25 Identity = 56/126 (44.44%), Postives = 82/126 (65.08%), Query Frame = 3 Query: 363 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 ++ V + V +E G V + I L DP + +M +++ P +Y D+GG + QI++++E VELP+ HPE + ++GI PPKGV+ YG PGTGKTLLA+AVAN+T A F+RV+GSEL Sbjct: 136 EYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSEL 261 The following BLAST results are available for this feature:
BLAST of CB417332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 240
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Sequences
The
following sequences are available for this feature:
EST sequence >CB417332 ID=CB417332; Name=CB417332; organism=Citrus sinensis; type=EST; length=741bpback to top |