CB417332

Overview
NameCB417332
Unique NameCB417332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: SAV_SULAC (Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 3
Query:  513 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            P V++ D+G  +E  +K+RE+VE PM HPE F +LGIDPPKG+L YGPPGTGKTLLARA+AN   A FI V G E+
Sbjct:  207 PKVSWEDIGDLEEAKQKIREIVEWPMRHPELFQRLGIDPPKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEI 282          

HSP 2 Score: 92.0485 bits (227), Expect = 3.508e-18
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  474 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            I PS+      E P V +ND+GG     +++RE VE P+  PE F K G+ PPKG+L +GPPGTGKT+LA+AVA  + A FI V G E+
Sbjct:  469 IQPSLLREVYVEVPKVNWNDIGGLDNVKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 557          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: CDC48_YEAST (Cell division control protein 48 OS=Saccharomyces cerevisiae GN=CDC48 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 3
Query:  516 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +V Y+D+GGC++Q+ ++RE+VELP+ HP+ F  +GI PP+GVL YGPPGTGKTL+ARAVAN T A F  + G E+
Sbjct:  210 EVGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEV 284          

HSP 2 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 3
Query:  477 DPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +PS    TV E  +VT++DVGG  E  E+++E VE P+LHP+++ K G+ P KGVL YGPPGTGKTLLA+AVA    A FI V G EL
Sbjct:  470 NPSALRETVVESVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPEL 557          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  516 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +V Y+D+GGC+ Q+ ++RE+VELP+ HP+ F  +GI PP+G+L YGPPGTGKTL+ARAVAN T A F  + G E+
Sbjct:  220 EVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEI 294          

HSP 2 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 3
Query:  477 DPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +PS    TV E P+V + D+GG +E   ++RE V++P+++ EKF++ G+ P KGVL +GPPGTGKTLLA+A+AN   A FI V G EL
Sbjct:  480 NPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGPEL 567          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: FB58_ARATH (F-box protein At1g53790 OS=Arabidopsis thaliana GN=At1g53790 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 3
Query:   75 PLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQV 290
            PLDEDDIAL+KTYGL PYS  IKK EKEIK++ +K+NDLCGIKESDTGLA  S       KQMMQE QPLQV
Sbjct:    9 PLDEDDIALVKTYGLVPYSAPIKKVEKEIKELTEKINDLCGIKESDTGLAPLS-------KQMMQEGQPLQV 73          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: TERA_XENTR (Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  504 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            E   +V Y+D+GGC++Q+ +++E+VELP+ HP  F  +G+ PP+G+L YGPPGTGKTL+ARAVAN T A F  + G E+
Sbjct:  196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274          

HSP 2 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 49/124 (39.52%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  369 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            ++ L D+    ++   + V +D  ++ +      + +PS    TV E P VT+ D+GG ++   +++E+V+ P+ HP+KF+K G+ P KGVL YGPPG GKTLLA+A+AN   A FI + G EL
Sbjct:  429 LIDLEDETIDAEVMNSLAVTMDDFRWALS-----QSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  504 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            E   +V Y+D+GGC++Q+ +++E+VELP+ HP  F  +G+ PP+G+L YGPPGTGKTL+ARAVAN T A F  + G E+
Sbjct:  196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274          

HSP 2 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 49/124 (39.52%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  369 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            ++ L D+    ++   + V +D  ++ +      + +PS    TV E P VT+ D+GG ++   +++E+V+ P+ HP+KF+K G+ P KGVL YGPPG GKTLLA+A+AN   A FI + G EL
Sbjct:  429 LIDLEDETIDAEVMNSLAVTMDDFRWALS-----QSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  504 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            E   +V Y+D+GGC++Q+ +++E+VELP+ HP  F  +G+ PP+G+L YGPPGTGKTL+ARAVAN T A F  + G E+
Sbjct:  196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274          

HSP 2 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 49/124 (39.52%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  369 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            ++ L D+    ++   + V +D  ++ +      + +PS    TV E P VT+ D+GG ++   +++E+V+ P+ HP+KF+K G+ P KGVL YGPPG GKTLLA+A+AN   A FI + G EL
Sbjct:  429 LIDLEDETIDAEVMNSLAVTMDDFRWALS-----QSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  504 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            E   +V Y+D+GGC++Q+ +++E+VELP+ HP  F  +G+ PP+G+L YGPPGTGKTL+ARAVAN T A F  + G E+
Sbjct:  196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274          

HSP 2 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 48/124 (38.71%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  369 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            ++ L D+    ++   + V +D  ++ +      + +PS    TV E P VT+ D+GG ++   +++++V+ P+ HP+KF+K G+ P KGVL YGPPG GKTLLA+A+AN   A FI + G EL
Sbjct:  429 LIDLEDETIDAEVMNSLAVTMDDFRWALS-----QSNPSALRETVVEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  504 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            E   +V Y+D+GGC++Q+ +++E+VELP+ HP  F  +G+ PP+G+L YGPPGTGKTL+ARAVAN T A F  + G E+
Sbjct:  196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274          

HSP 2 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 49/124 (39.52%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  369 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            ++ L D+    ++   + V +D  ++ +      + +PS    TV E P VT+ D+GG ++   +++E+V+ P+ HP+KF+K G+ P KGVL YGPPG GKTLLA+A+AN   A FI + G EL
Sbjct:  429 LIDLEDETIDAEVMNSLAVTMDDFRWALS-----QSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  504 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            E   +V Y+D+GGC++Q+ +++E+VELP+ HP  F  +G+ PP+G+L YGPPGTGKTL+ARAVAN T A F  + G E+
Sbjct:  196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274          

HSP 2 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 49/124 (39.52%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  369 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            ++ L D+    ++   + V +D  ++ +      + +PS    TV E P VT+ D+GG ++   +++E+V+ P+ HP+KF+K G+ P KGVL YGPPG GKTLLA+A+AN   A FI + G EL
Sbjct:  429 LIDLEDETIDAEVMNSLAVTMDDFRWALS-----QSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547          
The following BLAST results are available for this feature:
BLAST of CB417332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
SAV_SULAC9.862e-2161.84Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE... [more]
CDC48_YEAST9.862e-2158.67Cell division control protein 48 OS=Saccharomyces ... [more]
CDC48_SCHPO9.862e-2157.33Cell division cycle protein 48 OS=Schizosaccharomy... [more]
FB58_ARATH1.288e-2072.22F-box protein At1g53790 OS=Arabidopsis thaliana GN... [more]
TERA_XENTR3.748e-2053.16Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_XENLA3.748e-2053.16Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_RAT3.748e-2053.16Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_PIG3.748e-2053.16Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_MOUSE3.748e-2053.16Transitional endoplasmic reticulum ATPase OS=Mus m... [more]
TERA_HUMAN3.748e-2053.16Transitional endoplasmic reticulum ATPase OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionEST0409 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P081 similar to 26S protease regulatory subunit 7 (acc# O64982), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417332 ID=CB417332; Name=CB417332; organism=Citrus sinensis; type=EST; length=741bp
CCAAGCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAG
ATCAAGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCT
TCTCAAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGG
AGAAAGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATC
AAGGAGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTC
GGATAAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCA
CCAAGATAATCAGTCCAAACCCTGAAGATGCCAAATATGTTATAAATGTT
AAGCAGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAAC
GGATATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGA
TTCAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACC
GTGGAAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGA
GCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTG
AGAAATTTGTAAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTATGCTAT
GGTCCTCCTGGCACTGGTAAAACATTATTAGCCAGAGCTGTAGCTAACAG
AACCGATGCTTGTTTTATTCGTGTGATTGGGAGTGAGCTTG
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