CB417332

Overview
NameCB417332
Unique NameCB417332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.123e-32
Identity = 74/166 (44.58%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  243 LVSDKQMMQEEQPLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSEL
Sbjct:   58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 219          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.123e-32
Identity = 74/166 (44.58%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  243 LVSDKQMMQEEQPLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSEL
Sbjct:   58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 219          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.502e-32
Identity = 81/214 (37.85%), Postives = 119/214 (55.61%), Query Frame = 3
Query:  126 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP---------NPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            YST ++K E ++K+  +K   L  ++     L   ++ D+  +   +++E  +      K+  P            + K V+       F+V L   V P DI  G RV +++    +   LP + D     M +EEKPD+ + D+GG   QI  ++EVVELP+ +PE F K+GI PPKGVL YGPPGTGKTLLA+AVA  T+A F+RV+GSEL
Sbjct:    7 YSTDVQKNEMDLKEFKEKAY-LAELESKVLRLELKNK-DITRENVQIKKENEILKRELDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSEL 218          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.268e-32
Identity = 81/214 (37.85%), Postives = 120/214 (56.07%), Query Frame = 3
Query:  126 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP---------NPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            YST I+K + ++K+  +K   +  ++     L   ++ D+  +   +++E  +      K+  P            + K V+       F+V L   V P DI  G RV +++    I   LP + D     M +EEKPD+++ D+GG   QI  ++EVVELP+ +PE F K+GI PPKGVL YGPPGTGKTLLA+AVA  T+A F+RV+GSEL
Sbjct:    7 YSTDIEKNKMDLKEFKEKTQ-IAELESKVLRLELKNK-DVTRENVQIKKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSEL 218          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.268e-32
Identity = 81/214 (37.85%), Postives = 120/214 (56.07%), Query Frame = 3
Query:  126 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP---------NPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            YST I+K + ++K+  +K   +  ++     L   ++ D+  +   +++E  +      K+  P            + K V+       F+V L   V P DI  G RV +++    I   LP + D     M +EEKPD+++ D+GG   QI  ++EVVELP+ +PE F K+GI PPKGVL YGPPGTGKTLLA+AVA  T+A F+RV+GSEL
Sbjct:    7 YSTDIEKNKMDLKEFKEKTQ-IAELESKVLRLELKNK-DISRENVQIKKENEILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSEL 218          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.268e-32
Identity = 82/218 (37.61%), Postives = 121/218 (55.50%), Query Frame = 3
Query:  144 KAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVS-----------DKQMMQEEQPLQVARCTKIISP--------NPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            K EKEI D +   NDL   +  +    A  +  ++            + Q+M+E + L+       + P           + K V+       F+V +   V+P D+  G RV +++    +   LP   D     M V+E+P+V Y D+GG ++Q++++REVVELP+ HPE F K+GI+PPKG+L YGPPGTGKTLLA+AVA  T+A FIRV+GSEL
Sbjct:   23 KEEKEINDNSNLKNDLLKEELQEKARIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 240          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.574e-32
Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 3
Query:  324 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +D + ++      +FVV +   +  + +  G RV +D+    I   LP   DP+V    V E+P+VTYND+GG K+Q++++RE +ELP+ HPE F ++GIDPPKGVL YGPPG GKTL+A+A+A+  +A FIRV+GSEL
Sbjct:   69 DDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSEL 207          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.574e-32
Identity = 81/214 (37.85%), Postives = 120/214 (56.07%), Query Frame = 3
Query:  126 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP---------NPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            YST I+K + ++K+  +K   +  ++     L   ++ D+  +   +++E  +      K+  P            + K V+       F+V L   V P DI  G RV +++    I   LP + D     M +EEKPD+++ D+GG   QI  ++EVVELP+ +PE F K+GI PPKGVL YGPPGTGKTLLA+AVA  T+A F+RV+GSEL
Sbjct:    7 YSTDIEKNKMDLKEFKEKTQ-IAELESKVLRLELKNK-DINRENVQIKKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSEL 218          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.574e-32
Identity = 80/214 (37.38%), Postives = 120/214 (56.07%), Query Frame = 3
Query:  126 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP---------NPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            YST ++K + ++K+  +K   +  ++     L   ++ D+  +   +++E  +      K+  P            + K V+       F+V L   V P DI  G RV +++    I   LP + D     M +EEKPD+++ D+GG   QI  ++EVVELP+ +PE F K+GI PPKGVL YGPPGTGKTLLA+AVA  T+A F+RV+GSEL
Sbjct:    7 YSTDVEKNKMDLKEFKEKTQ-IAELESKVLRLELKNK-DISRENVQIKKENEILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSEL 218          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.280e-32
Identity = 66/139 (47.48%), Postives = 95/139 (68.35%), Query Frame = 3
Query:  324 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +D + ++      +FVV +   +    ++ G RV +D+    I   LP + DPSV    V E+P VTYND+GG ++Q++++RE +ELP+ HPE F ++GI+PPKGVL YGPPG GKTL+A+AVAN  +A FIRV+GSEL
Sbjct:   70 DDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSEL 208          
The following BLAST results are available for this feature:
BLAST of CB417332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PRS8_HUMAN1.123e-3244.5826S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN1.123e-3244.5826S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PSMR_METVS2.502e-3237.85Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM73.268e-3237.85Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM54.268e-3237.85Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METJA4.268e-3237.61Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PSMR_PYRFU5.574e-3246.76Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_METMP5.574e-3237.85Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM65.574e-3237.38Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_PYRKO7.280e-3247.48Proteasome-activating nucleotidase OS=Pyrococcus k... [more]

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Properties
Property NameValue
Genbank descriptionEST0409 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P081 similar to 26S protease regulatory subunit 7 (acc# O64982), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417332 ID=CB417332; Name=CB417332; organism=Citrus sinensis; type=EST; length=741bp
CCAAGCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAG
ATCAAGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCT
TCTCAAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGG
AGAAAGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATC
AAGGAGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTC
GGATAAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCA
CCAAGATAATCAGTCCAAACCCTGAAGATGCCAAATATGTTATAAATGTT
AAGCAGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAAC
GGATATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGA
TTCAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACC
GTGGAAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGA
GCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTG
AGAAATTTGTAAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTATGCTAT
GGTCCTCCTGGCACTGGTAAAACATTATTAGCCAGAGCTGTAGCTAACAG
AACCGATGCTTGTTTTATTCGTGTGATTGGGAGTGAGCTTG
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