CB417332

Overview
NameCB417332
Unique NameCB417332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.162e-29
Identity = 67/154 (43.51%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            PL +     ++  N    + ++      +F+V     V+P DI+ G R  +++    I   LP   D  V  M + + P   Y D+GG KEQI ++RE VELP+  PE F ++GI+PPKGVL YGPPGTGKTLLA+AVA+ T+A F+RV+GSEL
Sbjct:   99 PLIIGTVVDVVDAN----RVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSEL 248          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.518e-29
Identity = 85/245 (34.69%), Postives = 129/245 (52.65%), Query Frame = 3
Query:   81 DEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCG-----IKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNPED----------------AKYVI----NVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +ED +A + T  +   +  ++   + +K+ A++ N  C      IKE+              +K  + ++ P  V    +I+  NPED                 K V+      + I   VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +L
Sbjct:   13 EEDQLASMSTEDIVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQ-------------EKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.983e-29
Identity = 85/245 (34.69%), Postives = 128/245 (52.24%), Query Frame = 3
Query:   81 DEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCG-----IKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNPED----------------AKYVI----NVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +ED +A + T  +   +  +    + +K+ A++ N  C      IKE+              +K  + ++ P  V    +I+  NPED                 K V+      + I   VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +L
Sbjct:   13 EEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQ-------------EKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.382e-29
Identity = 87/239 (36.40%), Postives = 129/239 (53.97%), Query Frame = 3
Query:   87 DDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVN-DLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNPED----------------AKYVI----NVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            D +A + T  +G  S  +    + +K+ +++ N DL  +KE        +Q  +  +KQ+     P  V    +I+  +PED                 K V+      + I   VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLGI PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +L
Sbjct:   14 DQLASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEK----IKENQEKIKLNKQL-----PYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL---VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.417e-29
Identity = 65/154 (42.21%), Postives = 98/154 (63.64%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            PL +   T +I    ++++ ++      +F+V     + P  ++ G+R  +++    I   LP   D  +  M + E P+ TY ++GG + QIE++RE VELP+  P+ F K+GI PPKGVL YGPPGTGKTLLARAVA++T+A F+RV+GSEL
Sbjct:   74 PLVIGTVTDVI----DNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSEL 223          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.417e-29
Identity = 68/154 (44.16%), Postives = 95/154 (61.69%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            PL V   T II    +  + V+      +F+V +   V+PT ++ G+R  +++    I   LP   D  V  M + + P  TY D+GG ++QI ++RE VELPM  P+ F K+GI+PPKGVL YGPPGTGKTLLA+AVA+ T A F+  +GSEL
Sbjct:   74 PLIVGTITDII----DSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSEL 223          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.768e-29
Identity = 82/243 (33.74%), Postives = 127/243 (52.26%), Query Frame = 3
Query:   81 DEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQ---MMQEEQPLQVARCTKIISPNPED------AKYVINVKQIAKFVV--------------GLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            D+D +A + T  +   +  +    + +KD  ++ N           L   S  + + + Q    + ++ P  V    +I+  NPED      A   ++ ++  K VV              GL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H ++F KLGI PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +L
Sbjct:   18 DDDQLASMSTEDIVRATRLLDNETRVLKDELQRTN-----------LEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGL---VDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 246          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.534e-29
Identity = 66/154 (42.86%), Postives = 97/154 (62.99%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            PL +   T +I  N    + ++      +F+VG+   ++  +I+ G R  +++    I   LP   D  +  M V E P   Y ++GG ++QI ++RE VELP+  PE F K+GI+PPKGVL +GPPGTGKTLLARAVA++T+A F+RV+GSEL
Sbjct:   74 PLVIGTVTDLIDEN----RVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKTLLARAVAHQTEAHFLRVVGSEL 223          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.534e-29
Identity = 73/175 (41.71%), Postives = 100/175 (57.14%), Query Frame = 3
Query:  243 LVSDKQMMQEEQPLQVARCTKIISPNP---------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            L  +K  +Q+E        TK++SP           +D + V+        +V +   V    ++ G  V ++     I   LP + DP V  M VEE+P V + DVGG +EQI ++ E V LP+ +P  F +LGIDPPKGVL +GPPGTGKTLLA+AVA  T+A FIRV+GSEL
Sbjct:   35 LTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSEL 209          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.839e-29
Identity = 62/137 (45.26%), Postives = 91/137 (66.42%), Query Frame = 3
Query:  327 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PPKGVL YGPPGTGKT+LA+AVA  ++A FI V+ SE
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASE 203          
The following BLAST results are available for this feature:
BLAST of CB417332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PSMR_METB61.162e-2943.51Proteasome-activating nucleotidase OS=Methanoregul... [more]
PRS6A_BRACM1.518e-2934.6926S protease regulatory subunit 6A homolog OS=Bras... [more]
PS6AA_ARATH1.983e-2934.6926S protease regulatory subunit 6A homolog A OS=Ar... [more]
PS6AB_ARATH3.382e-2936.4026S protease regulatory subunit 6A homolog B OS=Ar... [more]
PSMR_METMJ4.417e-2942.21Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_METHJ4.417e-2944.16Proteasome-activating nucleotidase OS=Methanospiri... [more]
PRS6A_ORYSJ5.768e-2933.7426S protease regulatory subunit 6A homolog OS=Oryz... [more]
PSMR_METPE7.534e-2942.86Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_AERPE7.534e-2941.71Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PSMR_SULIY9.839e-2945.26Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionEST0409 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P081 similar to 26S protease regulatory subunit 7 (acc# O64982), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417332 ID=CB417332; Name=CB417332; organism=Citrus sinensis; type=EST; length=741bp
CCAAGCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAG
ATCAAGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCT
TCTCAAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGG
AGAAAGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATC
AAGGAGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTC
GGATAAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCA
CCAAGATAATCAGTCCAAACCCTGAAGATGCCAAATATGTTATAAATGTT
AAGCAGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAAC
GGATATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGA
TTCAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACC
GTGGAAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGA
GCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTG
AGAAATTTGTAAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTATGCTAT
GGTCCTCCTGGCACTGGTAAAACATTATTAGCCAGAGCTGTAGCTAACAG
AACCGATGCTTGTTTTATTCGTGTGATTGGGAGTGAGCTTG
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