CB417332

Overview
NameCB417332
Unique NameCB417332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.839e-29
Identity = 62/137 (45.26%), Postives = 91/137 (66.42%), Query Frame = 3
Query:  327 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PPKGVL YGPPGTGKT+LA+AVA  ++A FI V+ SE
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASE 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.839e-29
Identity = 62/137 (45.26%), Postives = 91/137 (66.42%), Query Frame = 3
Query:  327 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PPKGVL YGPPGTGKT+LA+AVA  ++A FI V+ SE
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASE 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.839e-29
Identity = 62/137 (45.26%), Postives = 91/137 (66.42%), Query Frame = 3
Query:  327 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PPKGVL YGPPGTGKT+LA+AVA  ++A FI V+ SE
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASE 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.839e-29
Identity = 62/137 (45.26%), Postives = 91/137 (66.42%), Query Frame = 3
Query:  327 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PPKGVL YGPPGTGKT+LA+AVA  ++A FI V+ SE
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASE 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.839e-29
Identity = 62/137 (45.26%), Postives = 91/137 (66.42%), Query Frame = 3
Query:  327 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PPKGVL YGPPGTGKT+LA+AVA  ++A FI V+ SE
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASE 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.285e-28
Identity = 59/139 (42.45%), Postives = 92/139 (66.19%), Query Frame = 3
Query:  324 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +  ++++      ++VVG  + V  + + +G+RV +D     I   LP ++DP V  M++E+  D+++  VGG  EQI ++REV+ELP+ +PE F+++GI PPKGVL YGPPGTGKTLLARAVA      F++V+ S +
Sbjct:   64 DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAI 202          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.678e-28
Identity = 61/137 (44.53%), Postives = 91/137 (66.42%), Query Frame = 3
Query:  327 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + E+P+VTY+++GG +EQI ++REVVELP+ +PE F ++G++PPKGVL YGPPGTGKT+LA+AVA  ++A FI V+ SE
Sbjct:   67 DGRVLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASE 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.678e-28
Identity = 73/201 (36.32%), Postives = 115/201 (57.21%), Query Frame = 3
Query:  150 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE F ++GI PPKG L YGPPGTGKTLLARAVA++ D  F++V+ S +
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSI 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.678e-28
Identity = 73/201 (36.32%), Postives = 115/201 (57.21%), Query Frame = 3
Query:  150 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE F ++GI PPKG L YGPPGTGKTLLARAVA++ D  F++V+ S +
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSI 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.678e-28
Identity = 73/201 (36.32%), Postives = 115/201 (57.21%), Query Frame = 3
Query:  150 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE F ++GI PPKG L YGPPGTGKTLLARAVA++ D  F++V+ S +
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSI 203          
The following BLAST results are available for this feature:
BLAST of CB417332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PSMR_SULIN9.839e-2945.26Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM9.839e-2945.26Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL9.839e-2945.26Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK9.839e-2945.26Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA9.839e-2945.26Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PRS10_SCHPO1.285e-2842.45Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PSMR_SULSO1.678e-2844.53Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PRS10_SPETR1.678e-2836.3226S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE1.678e-2836.3226S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN1.678e-2836.3226S protease regulatory subunit S10B OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionEST0409 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P081 similar to 26S protease regulatory subunit 7 (acc# O64982), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417332 ID=CB417332; Name=CB417332; organism=Citrus sinensis; type=EST; length=741bp
CCAAGCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAG
ATCAAGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCT
TCTCAAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGG
AGAAAGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATC
AAGGAGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTC
GGATAAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCA
CCAAGATAATCAGTCCAAACCCTGAAGATGCCAAATATGTTATAAATGTT
AAGCAGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAAC
GGATATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGA
TTCAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACC
GTGGAAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGA
GCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTG
AGAAATTTGTAAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTATGCTAT
GGTCCTCCTGGCACTGGTAAAACATTATTAGCCAGAGCTGTAGCTAACAG
AACCGATGCTTGTTTTATTCGTGTGATTGGGAGTGAGCTTG
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