CB417332
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.678e-28 Identity = 73/201 (36.32%), Postives = 115/201 (57.21%), Query Frame = 3 Query: 150 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 +K ++D KK L KE D L + KQ + E L+ V + + + K+++ ++VVG ++ + ++ G RV +D I LP ++DP V M+ E+ +V+Y+++GG EQI ++REV+ELP+ +PE F ++GI PPKG L YGPPGTGKTLLARAVA++ D F++V+ S + Sbjct: 6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSI 203
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28 Identity = 65/154 (42.21%), Postives = 96/154 (62.34%), Query Frame = 3 Query: 279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 P+ V +II +D +++ ++ V + V +E G V ++ + + L DP VT+M +E+ P TY D+GG QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL Sbjct: 105 PMSVGNLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 254
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28 Identity = 70/214 (32.71%), Postives = 120/214 (56.07%), Query Frame = 3 Query: 117 LGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEE------QPLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 LG + S++ ++++ + + C ES+ + + + +Q E PL + +I ++ + ++ +F+V + + + G +V ++++ I +P +P V M V E +V Y+ +GG EQI++++E VELP++ PE+F ++GI+PPKGVL YG PGTGKTLLA+AVA+RT+A FIRV+GSEL Sbjct: 20 LGESTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVI----KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSEL 229
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.883e-28 Identity = 59/139 (42.45%), Postives = 91/139 (65.47%), Query Frame = 3 Query: 324 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 ++ + ++ ++VVG KV + G RV +D I LP ++DP V M E+ +++Y+ VGG +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTLLARA+A+ DA F++V+ S + Sbjct: 71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 209
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.883e-28 Identity = 59/139 (42.45%), Postives = 91/139 (65.47%), Query Frame = 3 Query: 324 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 ++ + ++ ++VVG KV + G RV +D I LP ++DP V M E+ +++Y+ VGG +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTLLARA+A+ DA F++V+ S + Sbjct: 71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 209
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.378e-28 Identity = 70/214 (32.71%), Postives = 119/214 (55.61%), Query Frame = 3 Query: 117 LGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEE------QPLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 LG + S++ ++++ + + C ES+ + + + +Q E PL + +I ++ + ++ +F+V + + + G +V ++++ I +P +P V M V E +V Y+ +GG EQI++++E VELP+ PE+F ++GI+PPKGVL YG PGTGKTLLA+AVA+RT+A FIRV+GSEL Sbjct: 20 LGETTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVI----KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSEL 229
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.378e-28 Identity = 62/124 (50.00%), Postives = 87/124 (70.16%), Query Frame = 3 Query: 369 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 VVGL V P +++ G VGV+++ Y I LP + D V M V+EKP Y+D+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +L Sbjct: 120 VVGL---VDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.378e-28 Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 3 Query: 279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 P+ V +II +D +++ ++ V + V +E G V ++ + + L DP VT+M VE+ P TY D+GG QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL Sbjct: 106 PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 255
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.378e-28 Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 3 Query: 279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 P+ V +II +D +++ ++ V + V +E G V ++ + + L DP VT+M VE+ P TY D+GG QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL Sbjct: 106 PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 255
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.378e-28 Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 3 Query: 279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 P+ V +II +D +++ ++ V + V +E G V ++ + + L DP VT+M VE+ P TY D+GG QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL Sbjct: 106 PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 255 The following BLAST results are available for this feature:
BLAST of CB417332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 240
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Sequences
The
following sequences are available for this feature:
EST sequence >CB417332 ID=CB417332; Name=CB417332; organism=Citrus sinensis; type=EST; length=741bpback to top |