CB417332

Overview
NameCB417332
Unique NameCB417332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.678e-28
Identity = 73/201 (36.32%), Postives = 115/201 (57.21%), Query Frame = 3
Query:  150 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE F ++GI PPKG L YGPPGTGKTLLARAVA++ D  F++V+ S +
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSI 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28
Identity = 65/154 (42.21%), Postives = 96/154 (62.34%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            P+ V    +II    +D   +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M +E+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL
Sbjct:  105 PMSVGNLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 254          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 70/214 (32.71%), Postives = 120/214 (56.07%), Query Frame = 3
Query:  117 LGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEE------QPLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            LG  + S++   ++++     + + C   ES+       +     + + +Q E       PL +     +I    ++ + ++      +F+V +   +    +  G +V ++++   I   +P   +P V  M V E  +V Y+ +GG  EQI++++E VELP++ PE+F ++GI+PPKGVL YG PGTGKTLLA+AVA+RT+A FIRV+GSEL
Sbjct:   20 LGESTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVI----KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSEL 229          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.883e-28
Identity = 59/139 (42.45%), Postives = 91/139 (65.47%), Query Frame = 3
Query:  324 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +++Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S +
Sbjct:   71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 209          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.883e-28
Identity = 59/139 (42.45%), Postives = 91/139 (65.47%), Query Frame = 3
Query:  324 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +++Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S +
Sbjct:   71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 209          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.378e-28
Identity = 70/214 (32.71%), Postives = 119/214 (55.61%), Query Frame = 3
Query:  117 LGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEE------QPLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            LG  + S++   ++++     + + C   ES+       +     + + +Q E       PL +     +I    ++ + ++      +F+V +   +    +  G +V ++++   I   +P   +P V  M V E  +V Y+ +GG  EQI++++E VELP+  PE+F ++GI+PPKGVL YG PGTGKTLLA+AVA+RT+A FIRV+GSEL
Sbjct:   20 LGETTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVI----KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSEL 229          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.378e-28
Identity = 62/124 (50.00%), Postives = 87/124 (70.16%), Query Frame = 3
Query:  369 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            VVGL   V P +++ G  VGV+++ Y I   LP + D  V  M V+EKP   Y+D+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +L
Sbjct:  120 VVGL---VDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.378e-28
Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            P+ V    +II    +D   +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M VE+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL
Sbjct:  106 PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 255          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.378e-28
Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            P+ V    +II    +D   +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M VE+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL
Sbjct:  106 PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 255          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.378e-28
Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            P+ V    +II    +D   +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M VE+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL
Sbjct:  106 PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 255          
The following BLAST results are available for this feature:
BLAST of CB417332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PRS10_BOVIN1.678e-2836.3226S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS4_DROME2.192e-2842.2126S protease regulatory subunit 4 OS=Drosophila me... [more]
PSMR_METAC2.863e-2832.71Proteasome-activating nucleotidase OS=Methanosarci... [more]
PS10B_ARATH4.883e-2842.4526S protease regulatory subunit S10B homolog B OS=... [more]
PS10A_ARATH4.883e-2842.4526S protease regulatory subunit 10B homolog A OS=A... [more]
PSMR_METMA6.378e-2832.71Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS6A_SOLLC6.378e-2850.0026S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS4_RAT6.378e-2842.8626S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE6.378e-2842.8626S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN6.378e-2842.8626S protease regulatory subunit 4 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionEST0409 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P081 similar to 26S protease regulatory subunit 7 (acc# O64982), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417332 ID=CB417332; Name=CB417332; organism=Citrus sinensis; type=EST; length=741bp
CCAAGCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAG
ATCAAGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCT
TCTCAAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGG
AGAAAGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATC
AAGGAGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTC
GGATAAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCA
CCAAGATAATCAGTCCAAACCCTGAAGATGCCAAATATGTTATAAATGTT
AAGCAGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAAC
GGATATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGA
TTCAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACC
GTGGAAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGA
GCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTG
AGAAATTTGTAAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTATGCTAT
GGTCCTCCTGGCACTGGTAAAACATTATTAGCCAGAGCTGTAGCTAACAG
AACCGATGCTTGTTTTATTCGTGTGATTGGGAGTGAGCTTG
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