CB417332

Overview
NameCB417332
Unique NameCB417332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.421e-27
Identity = 65/154 (42.21%), Postives = 96/154 (62.34%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            P+ V    +II    +D   +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M +E+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL
Sbjct:  106 PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 255          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.424e-27
Identity = 61/137 (44.53%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  327 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            D K ++        +V +   +    ++ G  V + +    I   LP + D  V    V EKP+V Y+D+GG  EQI ++REV+ELP+ +PE F ++GIDPPKGVL YGPPGTGKTLLA+AVA  ++A FI+V+ SE
Sbjct:   67 DGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASE 203          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.424e-27
Identity = 63/154 (40.91%), Postives = 96/154 (62.34%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            P+ V    +II    +D   +++    ++  V +   V    +E G  V ++   + +   L    DP V++M +E+ P  TY DVGG  +QI++++E VELP+ HPE + ++GI PPKGV+ YG PGTGKTLLA+AVAN+T A F+R++GSEL
Sbjct:  109 PMAVGSLEEII----DDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSEL 258          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 7.051e-27
Identity = 65/180 (36.11%), Postives = 107/180 (59.44%), Query Frame = 3
Query:  207 SDTGLAAPSQWDLVSDKQMMQEEQ--PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            S++ +  P +     +K+ ++E +  PL +    +II    +D   ++    +  + V +   V    +E G  V +      I   L    DP V++M +++ P  +Y+D+GG + QI++++E VELP+ HPE + ++GI PPKGV+ YG PGTGKTLLA+AVAN+T A F+R++GSEL
Sbjct:   77 SNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEII----DDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.051e-27
Identity = 71/193 (36.79%), Postives = 111/193 (57.51%), Query Frame = 3
Query:  174 KKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQ----PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            KK+  L  ++++   L  P +    S+ Q    EQ    PL V    + +    +D   +I      ++ V +   V    +E G  V ++     +   L  ++DP V +M +E+ P  TY D+GG +EQI++++E VELP+ +PE + ++GI PPKGV+ YG PGTGKTLLA+AVAN+T A F+RV+G+EL
Sbjct:   51 KKLAHLLSLEDNILSLCEPDKSSEGSNSQKHVVEQLRGSPLSVGTLEEFV----DDHHGIITTGVGLEYYVNIMSFVDKDLLEPGCTVLLNYKDNSVVGVLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTEL 239          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.051e-27
Identity = 62/166 (37.35%), Postives = 102/166 (61.45%), Query Frame = 3
Query:  249 SDKQMMQEEQ--PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +D+++++E +  PL V    +II  N       +  +   + +      V  + +  G  V ++     +   +  ++DP V +M VE+ P  +Y+D+GG + Q+++M+E +ELP+ HPE + ++GI PPKGV+ YG PGTGKTLLA+AVAN+T A F+RV+GSEL
Sbjct:   93 ADEKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIM----SFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 254          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 62/154 (40.26%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            P+ V    ++I  N      +++     ++ VG+   V    +E G  + +      +   L  ++DP V++M VE+ P  +Y D+GG + QI++++E VELP+ HPE +  +GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL
Sbjct:  109 PMSVGNLEELIDENHA----IVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 258          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 62/154 (40.26%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            P+ V    ++I  N      +++     ++ VG+   V    +E G  + +      +   L  ++DP V++M VE+ P  +Y D+GG + QI++++E VELP+ HPE +  +GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL
Sbjct:  109 PMSVGNLEELIDENHA----IVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 258          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 120.168 bits (300), Expect = 1.203e-26
Identity = 59/131 (45.04%), Postives = 88/131 (67.18%), Query Frame = 3
Query:  327 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI 719
            + KY++      +++VG+ + V  + +++G+RV +D     I   LP + DP V  MT  E+ ++T++ +GG  EQI ++REV+ELP+ +PE F ++GI PPKGVL YGPPGTGKTLLA+AVA    A FI
Sbjct:  114 EEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.571e-26
Identity = 66/163 (40.49%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  258 QMMQEEQPLQVARC-TKIISPNPEDAKYVINVK-QIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            ++ +E + L+ A      +   PED   VI       + +  L  +++ T +E G RV ++ + + +Q  L  + D     M V+E P VTY D+GG  +Q+ ++RE VE P+++PEKF  +G++PP GVL +GPPGTGKT+LA+AVAN+TDA FI++ GSEL
Sbjct:   62 RLQRENETLKTASLYLATVEDLPEDGSAVIKQHGNNQEVLTELSPRLADT-LEVGDRVAIN-DSFSVQRVLDDETDARAQAMEVDESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGVEPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSEL 222          
The following BLAST results are available for this feature:
BLAST of CB417332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PRS4_CHICK1.421e-2742.2126S protease regulatory subunit 4 OS=Gallus gallus... [more]
PSMR_SULTO2.424e-2744.53Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PRS4_CAEEL2.424e-2740.91Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS4_YEAST7.051e-2736.1126S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_ENCCU7.051e-2736.7926S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS4_DICDI7.051e-2737.3526S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS4B_ARATH9.209e-2740.2626S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH9.209e-2740.2626S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS10_YEAST1.203e-2645.0426S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PSMR1_HALSA1.571e-2640.49Proteasome-activating nucleotidase 1 OS=Halobacter... [more]

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Properties
Property NameValue
Genbank descriptionEST0409 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P081 similar to 26S protease regulatory subunit 7 (acc# O64982), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417332 ID=CB417332; Name=CB417332; organism=Citrus sinensis; type=EST; length=741bp
CCAAGCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAG
ATCAAGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCT
TCTCAAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGG
AGAAAGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATC
AAGGAGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTC
GGATAAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCA
CCAAGATAATCAGTCCAAACCCTGAAGATGCCAAATATGTTATAAATGTT
AAGCAGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAAC
GGATATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGA
TTCAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACC
GTGGAAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGA
GCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTG
AGAAATTTGTAAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTATGCTAT
GGTCCTCCTGGCACTGGTAAAACATTATTAGCCAGAGCTGTAGCTAACAG
AACCGATGCTTGTTTTATTCGTGTGATTGGGAGTGAGCTTG
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